Guide to the Human Genome
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Name: LOC441009 Sequence: fasta or formatted (171aa) NCBI GI: 113416043
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {171aa} PREDICTED: hypothetical protein
alt mRNA {171aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         22           1
 C cysteine            1.8          3           1
 D aspartate           2.3          4           1
 E glutamate           7.0         12           1
 F phenylalanine       1.8          3           1
 G glycine            15.2         26           2
 H histidine           1.8          3           2
 I isoleucine          1.8          3           1
 K lysine              0.0          0           0
 L leucine             5.3          9           2
 M methionine          1.2          2           1
 N asparagine          0.0          0           0
 P proline             8.8         15           2
 Q glutamine           2.3          4           1
 R arginine           16.4         28           2
 S serine              8.8         15           2
 T threonine           3.5          6           1
 V valine              5.8         10           2
 W tryptophan          3.5          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC441009             1.000   PREDICTED: hypothetical protein 
LOC441009             1.000   PREDICTED: hypothetical protein 
LOC728650             0.057   PREDICTED: hypothetical protein 
LOC728650             0.057   PREDICTED: hypothetical protein 
LOC100292124          0.030   PREDICTED: hypothetical protein XP_002346387 
LOC100293136          0.030   PREDICTED: hypothetical protein 
LOC100290831          0.030   PREDICTED: hypothetical protein XP_002347799 
LOC100287562          0.030   PREDICTED: hypothetical protein XP_002343591 
LOC100291136          0.027   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.027   PREDICTED: hypothetical protein XP_002343480 
COL1A2                0.024   alpha 2 type I collagen 
LOC100130128          0.024   PREDICTED: hypothetical protein 
LOC100130128          0.024   PREDICTED: hypothetical protein 
LOC100130128          0.024   PREDICTED: hypothetical protein 
LRRC16B               0.024   leucine rich repeat containing 16B 
LOC100291627          0.021   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.021   PREDICTED: hypothetical protein XP_002348034 
LOC100289745          0.021   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.021   PREDICTED: hypothetical protein XP_002342931 
LOC100287499          0.018   PREDICTED: hypothetical protein 
LOC100287499          0.018   PREDICTED: hypothetical protein XP_002343643 
COL2A1                0.018   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.018   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL5A1                0.018   alpha 1 type V collagen preproprotein 
LOC440292             0.018   PREDICTED: similar to hCG1731366 
LOC100293575          0.018   PREDICTED: hypothetical protein 
LOC100293985          0.018   PREDICTED: hypothetical protein 
LOC440292             0.018   PREDICTED: similar to hCG1731366 
LOC100290946          0.018   PREDICTED: hypothetical protein XP_002347121 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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