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Search of human proteins with 239755732
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755732 PREDICTED: similar to Nanog homeobox isoform 1
[Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755732 PREDICTED: similar to Nanog homeobox isoform 1 [Hom... 644 0.0
gi|153945816 Nanog homeobox [Homo sapiens] 642 0.0
gi|239755734 PREDICTED: similar to Nanog homeobox isoform 2 [Hom... 600 e-172
gi|24497513 homeobox A3 isoform a [Homo sapiens] 72 8e-13
gi|13562112 homeobox A3 isoform a [Homo sapiens] 72 8e-13
gi|4885185 distal-less homeobox 3 [Homo sapiens] 71 1e-12
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 70 2e-12
gi|4885187 distal-less homeobox 5 [Homo sapiens] 68 9e-12
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 68 9e-12
gi|24497515 homeobox A3 isoform b [Homo sapiens] 68 9e-12
gi|147901462 brain specific homeobox [Homo sapiens] 67 2e-11
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 67 2e-11
gi|82659115 distal-less homeobox 6 [Homo sapiens] 66 3e-11
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 66 3e-11
gi|4758168 distal-less homeobox 2 [Homo sapiens] 66 4e-11
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 65 6e-11
gi|84570137 homeobox B3 [Homo sapiens] 65 6e-11
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 65 7e-11
gi|4504465 homeobox B2 [Homo sapiens] 65 1e-10
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 64 1e-10
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens] 64 1e-10
gi|27886557 msh homeobox 2 [Homo sapiens] 64 2e-10
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 64 2e-10
gi|31377777 NK2 homeobox 8 [Homo sapiens] 64 2e-10
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 62 5e-10
gi|19923391 homeobox D3 [Homo sapiens] 62 6e-10
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 62 8e-10
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 62 8e-10
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 62 8e-10
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 61 1e-09
>gi|239755732 PREDICTED: similar to Nanog homeobox isoform 1 [Homo
sapiens]
Length = 305
Score = 644 bits (1661), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 60
MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
Sbjct: 1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 60
Query: 61 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 120
LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
Sbjct: 61 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 120
Query: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 180
SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
Sbjct: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 180
Query: 181 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 240
YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
Sbjct: 181 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 240
Query: 241 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 300
YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
Sbjct: 241 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 300
Query: 301 QPEDV 305
QPEDV
Sbjct: 301 QPEDV 305
>gi|153945816 Nanog homeobox [Homo sapiens]
Length = 305
Score = 642 bits (1655), Expect = 0.0
Identities = 304/305 (99%), Positives = 304/305 (99%)
Query: 1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 60
MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
Sbjct: 1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 60
Query: 61 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 120
LIQDSPDSSTSPKGKQPTSAE SVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
Sbjct: 61 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 120
Query: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 180
SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
Sbjct: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 180
Query: 181 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 240
YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
Sbjct: 181 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 240
Query: 241 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 300
YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
Sbjct: 241 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 300
Query: 301 QPEDV 305
QPEDV
Sbjct: 301 QPEDV 305
>gi|239755734 PREDICTED: similar to Nanog homeobox isoform 2 [Homo
sapiens]
Length = 289
Score = 600 bits (1548), Expect = e-172
Identities = 289/305 (94%), Positives = 289/305 (94%), Gaps = 16/305 (5%)
Query: 1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 60
MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
Sbjct: 1 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 60
Query: 61 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 120
LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
Sbjct: 61 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 120
Query: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 180
SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVT
Sbjct: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVT-------------- 166
Query: 181 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 240
QGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
Sbjct: 167 --QGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 224
Query: 241 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 300
YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
Sbjct: 225 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 284
Query: 301 QPEDV 305
QPEDV
Sbjct: 285 QPEDV 289
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 71.6 bits (174), Expect = 8e-13
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 31 PEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSP-----DSSTSPKGKQPTSAENSVA 85
P P S+ P SPL +S + Q P +T K +S E+
Sbjct: 122 PSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAG 181
Query: 86 KKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQN 145
K ++ RT ++S QL L F +YL + E++N+LNL+ +Q+K WFQN
Sbjct: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
Query: 146 QRMKSKRWQKNNWPKNSNGVTQKASAPTYP 175
+RMK K+ QK S+G + +P P
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPP 271
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 71.6 bits (174), Expect = 8e-13
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 31 PEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSP-----DSSTSPKGKQPTSAENSVA 85
P P S+ P SPL +S + Q P +T K +S E+
Sbjct: 122 PSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAG 181
Query: 86 KKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQN 145
K ++ RT ++S QL L F +YL + E++N+LNL+ +Q+K WFQN
Sbjct: 182 DKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 241
Query: 146 QRMKSKRWQKNNWPKNSNGVTQKASAPTYP 175
+RMK K+ QK S+G + +P P
Sbjct: 242 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPP 271
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 70.9 bits (172), Expect = 1e-12
Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 17/121 (14%)
Query: 75 KQPTSAENSVAKKEDKV---------PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQM 125
+QP A++ V+ KE+ P K +K RT++SS QL L RFQ+ +YL+L +
Sbjct: 100 EQPLPAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPER 159
Query: 126 QELSNILNLSYKQVKTWFQNQRMKSKRWQKN------NWPKNSNGVTQKASAPTYPSLYS 179
EL+ L L+ QVK WFQN+R K K+ KN + P NS+ + ++P P+L+
Sbjct: 160 AELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMA--CNSPPSPALWD 217
Query: 180 S 180
+
Sbjct: 218 T 218
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 70.5 bits (171), Expect = 2e-12
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 59 DLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPV---KKQKTRTVFSSTQLCVLNDRFQ 115
D L + ++S+ + K + ++ D PV K +K RT F+ QL L F+
Sbjct: 139 DKLDKSGSNASSDSEYKVKEEGDREISSSRDSPPVRLKKPRKARTAFTDHQLAQLERSFE 198
Query: 116 RQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 152
RQKYLS+Q EL+ LNL+ QVKTW+QN+R K KR
Sbjct: 199 RQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKR 235
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 68.2 bits (165), Expect = 9e-12
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 68 SSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQE 127
S+T+ K+ T E + + P K +K RT++SS QL L RFQ+ +YL+L + E
Sbjct: 113 SATNQPEKEVTEPEVRMVNGK---PKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAE 169
Query: 128 LSNILNLSYKQVKTWFQNQRMKSKRWQKNNW--PKN--SNGVTQKASAPTYPSLY----- 178
L+ L L+ QVK WFQN+R K K+ KN P++ S+ ++P P+++
Sbjct: 170 LAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPPEHSPSSSDPMACNSPQSPAVWEPQGS 229
Query: 179 --SSYHQGCLVNPTGNLPMWSNQTWNNSTW 206
S H PT N S+ N+++W
Sbjct: 230 SRSLSHHPHAHPPTSNQSPASSYLENSASW 259
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 68.2 bits (165), Expect = 9e-12
Identities = 53/185 (28%), Positives = 75/185 (40%), Gaps = 33/185 (17%)
Query: 35 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVK 94
Y + S A P+ +V P S L D ++ T E + K K
Sbjct: 71 YVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGAD--SEKSTVVEGGEVRFNGKGK-K 127
Query: 95 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR-- 152
+K RT++SS QL LN RFQ+ +YL+L + EL+ L L+ QVK WFQN+R K K+
Sbjct: 128 IRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLM 187
Query: 153 ----------------------------WQKNNWPKNSNGVTQKASAPTYPSLYSSYHQG 184
W N+ +G + P+Y S Y S HQ
Sbjct: 188 KQGGAALEGSALANGRALSAGSPPVPPGWNPNSSSGKGSGGNAGSYIPSYTSWYPSAHQE 247
Query: 185 CLVNP 189
+ P
Sbjct: 248 AMQQP 252
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 68.2 bits (165), Expect = 9e-12
Identities = 35/107 (32%), Positives = 55/107 (51%)
Query: 69 STSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQEL 128
+T K +S E+ K ++ RT ++S QL L F +YL + E+
Sbjct: 7 NTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEM 66
Query: 129 SNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYP 175
+N+LNL+ +Q+K WFQN+RMK K+ QK S+G + +P P
Sbjct: 67 ANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPP 113
>gi|147901462 brain specific homeobox [Homo sapiens]
Length = 233
Score = 67.4 bits (163), Expect = 2e-11
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 94 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 153
+++K RTVFS +QL L RF+ Q+YLS + EL+ L+LS QVKTWFQN+RMK K+
Sbjct: 109 RRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQ 168
Query: 154 --QKNNWPKNSNGVTQKASAP 172
+ + PK +G +P
Sbjct: 169 LRKSQDEPKAPDGPESPEGSP 189
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 67.0 bits (162), Expect = 2e-11
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 36 PSLQMSSAEMPHTETVSPLPSSMDLLIQDS----PDSSTSPKGKQPTSAENSVAKK-EDK 90
P L + MP TVS L ++ S D T+ P + + +++
Sbjct: 102 PPLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNR 161
Query: 91 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKS 150
P K++K RT FS Q+C L RF RQKYL+ + L+ L ++ QVKTWFQN+R K
Sbjct: 162 TPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKW 221
Query: 151 KR 152
+R
Sbjct: 222 RR 223
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 66.2 bits (160), Expect = 3e-11
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 94 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 153
K +K RT++SS QL LN RFQ+ +YL+L + EL+ L L+ QVK WFQN+R K K+
Sbjct: 138 KIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKL 197
Query: 154 QKNNWPKNSNGVTQKASA--PTYPSL-----YSSYHQGCLVNPTGNLPMWSNQTWNNSTW 206
K + + Q ++A P P+L S+ +G + P +P +S+ W +S
Sbjct: 198 LKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMPGYSH--WYSSPH 255
Query: 207 SNQTQNIQ 214
+ Q Q
Sbjct: 256 QDTMQRPQ 263
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 66.2 bits (160), Expect = 3e-11
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 10/133 (7%)
Query: 88 EDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQR 147
+++ P KK+K RT F+ Q+C L RF RQKYL+ + L+ L ++ QVKTWFQN+R
Sbjct: 194 QNRTPPKKKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQNRR 253
Query: 148 MKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWS 207
K W++ + Q+A+ L Q L P LP N+S ++
Sbjct: 254 TK---WRRQT-AEEREAERQQANR-ILLQLQQEAFQKSLAQP---LPADPLCVHNSSLFA 305
Query: 208 NQTQNIQSWSNHS 220
QN+Q WS+ S
Sbjct: 306 --LQNLQPWSDDS 316
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 65.9 bits (159), Expect = 4e-11
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 68 SSTSPKGKQPTSAENSVAKKE--------DKVPVKKQKTRTVFSSTQLCVLNDRFQRQKY 119
+S +P G + A N K++ + P K +K RT++SS QL L RFQ+ +Y
Sbjct: 117 TSYAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQY 176
Query: 120 LSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR-WQKNNWPKNSN 163
L+L + EL+ L L+ QVK WFQN+R K K+ W+ P +
Sbjct: 177 LALPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQH 221
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 65.5 bits (158), Expect = 6e-11
Identities = 40/112 (35%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 68 SSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQE 127
S+ +P G+ S+E+ + + K +++RT+F+ QL L +FQ+QKYLS +
Sbjct: 107 SAEAPGGEALASSESETEQPTPRQK-KPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLD 165
Query: 128 LSNILNLSYKQVKTWFQNQRMKSKRWQK------NNWPKNSNGVTQKASAPT 173
L+ L L+ QVKTW+QN+RMK W+K P G +K S PT
Sbjct: 166 LAQSLGLTQLQVKTWYQNRRMK---WKKMVLKGGQEAPTKPKGRPKKNSIPT 214
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 65.5 bits (158), Expect = 6e-11
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 89 DKVP---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQN 145
DK P ++ RT ++S QL L F +YL + E++N+LNLS +Q+K WFQN
Sbjct: 179 DKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQN 238
Query: 146 QRMKSKRWQKNNWPKNSNGVTQKASAPTYP 175
+RMK K+ QK +S+G A +P P
Sbjct: 239 RRMKYKKDQKAKGLASSSGGPSPAGSPPQP 268
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 65.1 bits (157), Expect = 7e-11
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 63 QDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKK-QKTRTVFSSTQLCVLNDRFQRQKYLS 121
+DS K+ E + +++ V KK +K RT FS QL L F+RQKYLS
Sbjct: 199 EDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLS 258
Query: 122 LQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSSY 181
+Q +L+ LNL+ QVKTW+QN+R K KR + + G+ A A Y +L +
Sbjct: 259 VQDRMDLAAALNLTDTQVKTWYQNRRTKWKR-------QTAVGLELLAEAGNYSALQRMF 311
Query: 182 HQGCLVNPT 190
+P+
Sbjct: 312 PSPYFYHPS 320
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 64.7 bits (156), Expect = 1e-10
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 34/184 (18%)
Query: 8 PQSLPCFEASDCKESSPMPVICGPEENYPSLQ--MSSAEMPHTETVS------------P 53
P L F+ S KES+ +P E+ +PSLQ S+ + P ++ + P
Sbjct: 26 PAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPPP 85
Query: 54 LPSSMDLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVK------------------K 95
LP++ + P K+P+ + S + VP
Sbjct: 86 LPAAPPA--PEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGA 143
Query: 96 QKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 155
++ RT +++TQL L F KYL + E++ +L+L+ +QVK WFQN+RMK KR +
Sbjct: 144 RRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQ 203
Query: 156 NNWP 159
+ P
Sbjct: 204 HREP 207
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 64.3 bits (155), Expect = 1e-10
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 7/118 (5%)
Query: 42 SAEMPHTETVSP---LPSSMDLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKV----PVK 94
S++ P+T ++ L S+ L +P +S K +P++ E+ KE K
Sbjct: 68 SSDNPYTRWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGGGGDAGK 127
Query: 95 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 152
K+K R +FS Q L RF++Q+YLS + + L++++ L+ QVK WFQN R K KR
Sbjct: 128 KRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
Length = 168
Score = 64.3 bits (155), Expect = 1e-10
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 66 PDSSTSPKGKQPTSAENSVAKKEDKVPVKK-QKTRTVFSSTQLCVLNDRFQRQKYLSLQQ 124
PDS +P+ ++ + P KK +K RT++SS QL LN RFQ +YL+L +
Sbjct: 22 PDSEKPRLSPEPS-------ERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPE 74
Query: 125 MQELSNILNLSYKQVKTWFQNQRMKSKRWQKNN-------WPKNSNGVTQKASAPTYPSL 177
+L+ L L+ QVK WFQN+R K K+ K N +P + V+ +P PSL
Sbjct: 75 RAQLAAQLGLTQTQVKIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVS--PCSPPLPSL 132
Query: 178 YSSYHQGCL 186
+ G L
Sbjct: 133 WDLPKAGTL 141
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 63.9 bits (154), Expect = 2e-10
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 96 QKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 155
+K RT F+++QL L +F++++YLS+ + E S+ LNL+ QVK WFQN+R K+KR Q+
Sbjct: 143 RKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQE 202
Query: 156 NNWPKNSNGVTQKASAPTYPSLYS 179
K + A+ P PS +S
Sbjct: 203 AELEK-----LKMAAKPMLPSSFS 221
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 63.9 bits (154), Expect = 2e-10
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 85 AKKEDKVPVKK-QKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWF 143
+++ + P KK +K RT++SS QL LN RFQ +YL+L + +L+ L L+ QVK WF
Sbjct: 106 SERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKIWF 165
Query: 144 QNQRMKSKRWQKNN-------WPKNSNGVTQKASAPTYPSLYSSYHQGCL 186
QN+R K K+ K N +P + V+ +P PSL+ G L
Sbjct: 166 QNKRSKYKKLLKQNSGGQEGDFPGRTFSVS--PCSPPLPSLWDLPKAGTL 213
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 63.9 bits (154), Expect = 2e-10
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 55 PSSMDLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRF 114
PSS + ++ SP S+ +P S + K++ K R +FS Q L RF
Sbjct: 52 PSSDESSLETSPPDSSQRPSARPASPGSDAEKRK--------KRRVLFSKAQTLELERRF 103
Query: 115 QRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 152
++Q+YLS + ++L+++L L+ QVK WFQN R K KR
Sbjct: 104 RQQRYLSAPEREQLASLLRLTPTQVKIWFQNHRYKLKR 141
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 62.4 bits (150), Expect = 5e-10
Identities = 37/88 (42%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 94 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 153
K +++RTVF+ QL L RF++QKYLS +L+ L LS QVKTW+QN+RMK K+
Sbjct: 141 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKI 200
Query: 154 QKNNW----PKNSNGVTQKASAPTYPSL 177
P G +K S PT L
Sbjct: 201 VLQGGGLESPTKPKGRPKKNSIPTSEQL 228
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 62.0 bits (149), Expect = 6e-10
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 75 KQPTSAENSVAKKEDKVPV--KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL 132
KQ S + EDK P ++ RT ++S QL L F +YL + E++N+L
Sbjct: 172 KQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLL 231
Query: 133 NLSYKQVKTWFQNQRMKSKRWQK 155
NL+ +Q+K WFQN+RMK K+ QK
Sbjct: 232 NLTERQIKIWFQNRRMKYKKDQK 254
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 61.6 bits (148), Expect = 8e-10
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 35 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKVP-V 93
Y +SA P +P P + P S + G + V+K +P
Sbjct: 130 YQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSA 189
Query: 94 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 153
++K R +FS Q+ L RF++QKYLS + + L+++++L+ QVK WFQN R K KR
Sbjct: 190 PRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 249
Query: 154 QKN 156
K+
Sbjct: 250 AKD 252
>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
Length = 371
Score = 61.6 bits (148), Expect = 8e-10
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 35 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKGKQPTSAENSVAKKEDKVP-V 93
Y +SA P +P P + P S + G + V+K +P
Sbjct: 100 YQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSA 159
Query: 94 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 153
++K R +FS Q+ L RF++QKYLS + + L+++++L+ QVK WFQN R K KR
Sbjct: 160 PRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 219
Query: 154 QKN 156
K+
Sbjct: 220 AKD 222
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 61.6 bits (148), Expect = 8e-10
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 61 LIQDSPDSSTSPKGKQPTSAENSVAKKEDKV-PVKKQKTRTVFSSTQLCVLNDRFQRQKY 119
+++D S K T+ + A++ ++ P ++K R +FS Q+ L RF++Q+Y
Sbjct: 113 VVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRY 172
Query: 120 LSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 156
LS + + L++ L L+ QVK WFQN+R K KR +++
Sbjct: 173 LSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQD 209
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 61.2 bits (147), Expect = 1e-09
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 30 GPEENYPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPK-GKQPTSAENSVAKKE 88
GPE P L AE+ + + S+ P + + P K P + + + +
Sbjct: 58 GPEAAAPGLPELRAELGRAPSPAKCASAFPAAPAFYPRAYSDPDPAKDPRAEKKELCALQ 117
Query: 89 DKVPVKK--------------QKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNL 134
V ++K +K R +FS Q+ L RF++Q+YLS + +L+++L L
Sbjct: 118 KAVELEKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKL 177
Query: 135 SYKQVKTWFQNQRMKSKRWQKN 156
+ QVK WFQN+R K KR +++
Sbjct: 178 TSTQVKIWFQNRRYKCKRQRQD 199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.122 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,376,489
Number of Sequences: 37866
Number of extensions: 644070
Number of successful extensions: 2590
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2115
Number of HSP's gapped (non-prelim): 453
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.