Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DLX5 Sequence: fasta or formatted (289aa) NCBI GI: 4885187
Description:

distal-less homeobox 5

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         29           2
 C cysteine            0.7          2           1
 D aspartate           2.1          6           1
 E glutamate           4.2         12           1
 F phenylalanine       2.1          6           1
 G glycine             5.9         17           2
 H histidine           4.2         12           2
 I isoleucine          2.1          6           1
 K lysine              4.8         14           2
 L leucine             5.5         16           1
 M methionine          2.1          6           1
 N asparagine          3.8         11           1
 P proline            10.7         31           3
 Q glutamine           6.2         18           1
 R arginine            4.2         12           2
 S serine             15.2         44           3
 T threonine           5.2         15           1
 V valine              3.5         10           1
 W tryptophan          1.0          3           1
 Y tyrosine            6.6         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   distal-less homeobox 5 
DLX3                  0.408   distal-less homeobox 3 
DLX2                  0.353   distal-less homeobox 2 
DLX6                  0.232   distal-less homeobox 6 
DLX1                  0.218   distal-less homeobox 1 isoform 1 
DLX4                  0.161   distal-less homeobox 4 isoform a 
DLX4                  0.161   distal-less homeobox 4 isoform b 
MSX2                  0.124   msh homeobox 2 
BARX2                 0.098   BarH-like homeobox 2 
BSX                   0.096   brain specific homeobox 
MSX1                  0.096   msh homeobox 1 
HOXB1                 0.094   homeobox B1 
NKX2-3                0.094   NK2 transcription factor related, locus 3 
BARX1                 0.091   BarH-like homeobox 1 
DBX2                  0.091   developing brain homeobox 2 
HOXA1                 0.087   homeobox A1 isoform a 
NKX2-6                0.086   NK2 transcription factor related, locus 6 
ARX                   0.086   aristaless related homeobox 
HOXC9                 0.086   homeobox C9 
NKX3-2                0.084   NK3 homeobox 2 
HOXA3                 0.082   homeobox A3 isoform b 
HOXA3                 0.082   homeobox A3 isoform a 
HOXA3                 0.082   homeobox A3 isoform a 
NKX2-2                0.082   NK2 transcription factor related, locus 2 
BARHL1                0.082   BarH-like homeobox 1 
NKX1-2                0.082   NK1 homeobox 2 
NKX1-2                0.082   PREDICTED: NK1 homeobox 2 
NKX1-2                0.082   PREDICTED: NK1 homeobox 2 
NKX1-2                0.082   PREDICTED: NK1 homeobox 2 
MNX1                  0.082   homeo box HB9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press