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Search of human proteins with 239755398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755398 PREDICTED: hypothetical protein [Homo sapiens]
(359 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755398 PREDICTED: hypothetical protein [Homo sapiens] 769 0.0
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 44 3e-04
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 42 9e-04
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 42 9e-04
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 42 9e-04
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 42 9e-04
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 42 9e-04
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 42 9e-04
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 42 9e-04
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 42 9e-04
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 42 9e-04
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 42 9e-04
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 42 9e-04
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 42 9e-04
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 42 9e-04
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 42 9e-04
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 40 0.002
gi|12707580 paired-like homeobox 2b [Homo sapiens] 40 0.002
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 40 0.003
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.009
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 39 0.009
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 39 0.009
gi|31982895 THAP domain containing 4 [Homo sapiens] 38 0.012
gi|7657575 sirtuin 1 isoform a [Homo sapiens] 38 0.016
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 38 0.016
gi|148613882 homeobox A4 [Homo sapiens] 37 0.021
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.027
gi|169202970 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
>gi|239755398 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 769 bits (1986), Expect = 0.0
Identities = 359/359 (100%), Positives = 359/359 (100%)
Query: 1 MGISASSPNRSARKYSTRSAAFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDP 60
MGISASSPNRSARKYSTRSAAFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDP
Sbjct: 1 MGISASSPNRSARKYSTRSAAFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDP 60
Query: 61 GRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDAL 120
GRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDAL
Sbjct: 61 GRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDAL 120
Query: 121 EGCSSPITAAQPASGFRLHRALERFPLGEIHTNPEVRGGCGSCRGVWNETDGNSQSVNVS 180
EGCSSPITAAQPASGFRLHRALERFPLGEIHTNPEVRGGCGSCRGVWNETDGNSQSVNVS
Sbjct: 121 EGCSSPITAAQPASGFRLHRALERFPLGEIHTNPEVRGGCGSCRGVWNETDGNSQSVNVS 180
Query: 181 SGIRQRHRIVTAAVVEDEWHQGSTWVWPPCLFLLVEPVSHGGPTTCSSWWNSSTTGGPHL 240
SGIRQRHRIVTAAVVEDEWHQGSTWVWPPCLFLLVEPVSHGGPTTCSSWWNSSTTGGPHL
Sbjct: 181 SGIRQRHRIVTAAVVEDEWHQGSTWVWPPCLFLLVEPVSHGGPTTCSSWWNSSTTGGPHL 240
Query: 241 FLLVEPVSHREASRLFLLVQPVSHRAGGGPPVPPGGAVSHGVAPHLFLLVELSPTGWPPV 300
FLLVEPVSHREASRLFLLVQPVSHRAGGGPPVPPGGAVSHGVAPHLFLLVELSPTGWPPV
Sbjct: 241 FLLVEPVSHREASRLFLLVQPVSHRAGGGPPVPPGGAVSHGVAPHLFLLVELSPTGWPPV 300
Query: 301 PPKCLGLYHLCQPPSSCSWGPVSSQSSRVSGLLRECGESREWSEQKSWLGGSQEPCTEA 359
PPKCLGLYHLCQPPSSCSWGPVSSQSSRVSGLLRECGESREWSEQKSWLGGSQEPCTEA
Sbjct: 301 PPKCLGLYHLCQPPSSCSWGPVSSQSSRVSGLLRECGESREWSEQKSWLGGSQEPCTEA 359
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 43.5 bits (101), Expect = 3e-04
Identities = 36/118 (30%), Positives = 44/118 (37%), Gaps = 6/118 (5%)
Query: 4 SASSPNRSARKYSTRSAAFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGA-RGGGDPGR 62
SA S N + + S KP GRRP RTPP G R P G + G P R
Sbjct: 15 SAQSLNEDVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPR 74
Query: 63 PG---ARAFSAASCQAGRPWRCGAAGGR--AAAALWRAGSPNPENPRYPPPSHQHQHE 115
PG + G P R G G+ + P P P PPP +Q +
Sbjct: 75 PGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ 132
Score = 30.4 bits (67), Expect = 2.6
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 24 KPPGRRPMSSRPLSRTPPHGGGEMVRRPSGA-RGGGDPGRP---------GARAFSAASC 73
KP G P PPH G P G + G P RP G
Sbjct: 161 KPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP 220
Query: 74 QAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEK 116
+ G+P + GG + P+P P+ PPP ++ ++
Sbjct: 221 RPGKPEGPPSQGGNKP----QGPPPHPGKPQGPPPQEGNKPQR 259
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 501 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 555
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 556 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 604
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 605 EKG-DRGPLG 613
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 381 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 430
Query: 103 PR 104
P+
Sbjct: 431 PK 432
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 439 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 493
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 494 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 542
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 543 EKG-DRGPLG 551
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 319 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 368
Query: 103 PR 104
P+
Sbjct: 369 PK 370
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 441 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 495
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 496 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 544
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 545 EKG-DRGPLG 553
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 321 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 370
Query: 103 PR 104
P+
Sbjct: 371 PK 372
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 444 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 498
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 499 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 547
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 548 EKG-DRGPLG 556
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 324 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 373
Query: 103 PR 104
P+
Sbjct: 374 PK 375
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 448 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 502
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 503 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 551
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 552 EKG-DRGPLG 560
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 328 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 377
Query: 103 PR 104
P+
Sbjct: 378 PK 379
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 482 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 536
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 537 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 585
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 586 EKG-DRGPLG 594
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 362 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 411
Query: 103 PR 104
P+
Sbjct: 412 PK 413
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 460 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 514
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 515 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 563
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 564 EKG-DRGPLG 572
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 340 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 389
Query: 103 PR 104
P+
Sbjct: 390 PK 391
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 472 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 526
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 527 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 575
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 576 EKG-DRGPLG 584
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 352 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 401
Query: 103 PR 104
P+
Sbjct: 402 PK 403
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 479 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 533
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 534 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 582
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 583 EKG-DRGPLG 591
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 359 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 408
Query: 103 PR 104
P+
Sbjct: 409 PK 410
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 482 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 536
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 537 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 585
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 586 EKG-DRGPLG 594
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 362 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 411
Query: 103 PR 104
P+
Sbjct: 412 PK 413
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 484 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 538
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 539 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 587
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 588 EKG-DRGPLG 596
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 364 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 413
Query: 103 PR 104
P+
Sbjct: 414 PK 415
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 489 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 543
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 544 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 592
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 593 EKG-DRGPLG 601
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 369 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 418
Query: 103 PR 104
P+
Sbjct: 419 PK 420
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 501 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 555
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 556 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 604
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 605 EKG-DRGPLG 613
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 381 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 430
Query: 103 PR 104
P+
Sbjct: 431 PK 432
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
P G+ P + PP G P G +G G PG PG + + QAG P G
Sbjct: 501 PRGKPGDMGPPGPQGPPGKDG-----PPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGE 555
Query: 84 AGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP-----ITAAQPASGFRL 138
AG + G P PE P PP L+G P + A+ GF+
Sbjct: 556 AGEKGNPGAEVPGLPGPEGPPGPP-----------GLQGVPGPKGEAGLDGAKGEKGFQG 604
Query: 139 HRALERFPLG 148
+ +R PLG
Sbjct: 605 EKG-DRGPLG 613
Score = 28.9 bits (63), Expect = 7.5
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 43 GGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPEN 102
GGG P G PG PG + + Q G P + G G R A AG P+
Sbjct: 381 GGGRGEPGPPGL-----PGPPGPKGEAGVDGQVGPPGQPGDKGERGA-----AGEQGPDG 430
Query: 103 PR 104
P+
Sbjct: 431 PK 432
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/121 (34%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 19 SAAFQKPPGRRP--MSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAG 76
SA PPG+ P +++ P S PP GG +G+R PG S C AG
Sbjct: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGG------AGSRDALFESPPGG---SGGDCSAG 572
Query: 77 R--PWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSPITAAQPAS 134
P AA G AAA AGS P R P P H H E A G +A +P
Sbjct: 573 STPPADSVAAAGAGAAA---AGS-GPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVG 628
Query: 135 G 135
G
Sbjct: 629 G 629
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/121 (34%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 19 SAAFQKPPGRRP--MSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAG 76
SA PPG+ P +++ P S PP GG +G+R PG S C AG
Sbjct: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGG------AGSRDALFESPPGG---SGGDCSAG 572
Query: 77 R--PWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSPITAAQPAS 134
P AA G AAA AGS P R P P H H E A G +A +P
Sbjct: 573 STPPADSVAAAGAGAAA---AGS-GPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVG 628
Query: 135 G 135
G
Sbjct: 629 G 629
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 40.4 bits (93), Expect = 0.002
Identities = 42/121 (34%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 19 SAAFQKPPGRRP--MSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAG 76
SA PPG+ P +++ P S PP GG +G+R PG S C AG
Sbjct: 522 SAEAAPPPGQPPQVVANGPGSGPPPPAGG------AGSRDALFESPPGG---SGGDCSAG 572
Query: 77 R--PWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSPITAAQPAS 134
P AA G AAA AGS P R P P H H E A G +A +P
Sbjct: 573 STPPADSVAAAGAGAAA---AGS-GPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRPVG 628
Query: 135 G 135
G
Sbjct: 629 G 629
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 4 SASSPNRSARKYSTRSAAFQKP-----PGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-- 56
S+ + S+R ++ A P PG P P +GGG P+GA G
Sbjct: 171 SSGKKSDSSRDDESKEAKSTDPDSTGGPGPNP---NPTPSCGANGGGGGGPSPAGAPGAA 227
Query: 57 -----GGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAA 90
GG+PG+ GA A +AA+ A AAGG AAA
Sbjct: 228 GPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAA 266
Score = 28.9 bits (63), Expect = 7.5
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 23 QKPPGRRPMSSRPLSRTPPHGGGEMVRRPS-----GARGGGD--PGRPGARAFSAASCQA 75
+K R S+ T P G P+ GA GGG P GA +
Sbjct: 174 KKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPG 233
Query: 76 GRPWRCGAAGGRAAAA 91
G P + GAA AAAA
Sbjct: 234 GEPGKGGAAAAAAAAA 249
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 40.0 bits (92), Expect = 0.003
Identities = 78/269 (28%), Positives = 94/269 (34%), Gaps = 63/269 (23%)
Query: 14 KYSTRSAAFQKPPGRR---PMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSA 70
++ R+ Q P RR P PL PP G ++R P AR G P RP A
Sbjct: 34 RHGPRTPGGQLPGARRGPGPRRPAPLPARPPGALGSVLR-PLRARPGCRPRRP----HPA 88
Query: 71 ASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSP--IT 128
A C RP R R GSP P PR P P AL G ++P
Sbjct: 89 ARCLPLRPHRPTRRHRRPGGFPLAWGSPQPA-PR-PAPGRSSAL----ALAGGAAPGVAR 142
Query: 129 AAQPA-SGFRLHRALERFPLGEIHTNPEVRGGCGSCRGVWNETDGNSQSVNVSSGIRQRH 187
A +P SG R H GG GS RG G+ G QR
Sbjct: 143 AQRPGGSGGRSHP-----------------GGPGSPRGGGTVGPGDRGPAAADGGRPQR- 184
Query: 188 RIVTAAVVEDEWHQGSTWVWPPCLFLLVEPVS--HGGPTTCSSWWNSSTTGGPHLFLLVE 245
T E + PP L PV HG P + T GP
Sbjct: 185 ---TVRAAETRGAAAA----PP--LTLEGPVQSHHGTP---------ALTQGPQ------ 220
Query: 246 PVSHREASRLFLLVQPVSHRAGGGPPVPP 274
S R+ ++L +PV R GG P+PP
Sbjct: 221 --SPRDGAQLGACTRPVDVRDSGGRPLPP 247
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.5 bits (88), Expect = 0.009
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 51 PSGARGG----GDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYP 106
P+GARG G+PG PG F+ G+P G G A A AG P P P P
Sbjct: 792 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGD--AGAKGDAGPPGPAGPAGP 849
Query: 107 P 107
P
Sbjct: 850 P 850
Score = 36.2 bits (82), Expect = 0.047
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAA 84
PPG R P SR P G + V P G G+ G PG + +AGRP G
Sbjct: 483 PPGER---GGPGSRGFP--GADGVAGPKGP--AGERGSPGPAGPKGSPGEAGRPGEAGLP 535
Query: 85 GGRAAAALWRAGSPNPENPRYPP 107
G + GSP P+ PP
Sbjct: 536 GAKGLTG--SPGSPGPDGKTGPP 556
Score = 33.1 bits (74), Expect = 0.40
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 51 PSGARGG-GDPGRPGARAFSAASCQAGRPWRCGAAGGRA-AAALWRAGSPNPENPRYPP 107
P G G G+ G PG + GRP G AG R A AG P P P PP
Sbjct: 285 PKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP 343
Score = 32.3 bits (72), Expect = 0.67
Identities = 32/98 (32%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 22 FQKPPGR--RPMSSRPLSRTPPHGGGEMVRRPSGARG----GGDPGRPGARAFSAASCQA 75
FQ PPG P +S P+ P G P G G G PGRPG R
Sbjct: 201 FQGPPGEPGEPGASGPMGPRGPPG-------PPGKNGDDGEAGKPGRPGERGPPGPQGAR 253
Query: 76 GRPWRC---GAAGGRAAAALWRA-GSPNPENPRYPPPS 109
G P G G R + L A G P P+ P S
Sbjct: 254 GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 291
Score = 32.0 bits (71), Expect = 0.88
Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 51 PSGARG-GGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAAL-------WRAGSPNPEN 102
PSG RG G PG PG + F + G P G G R AG P
Sbjct: 183 PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG 242
Query: 103 PRYPP 107
R PP
Sbjct: 243 ERGPP 247
Score = 31.2 bits (69), Expect = 1.5
Identities = 27/93 (29%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAA 84
PPG + P + P GE P A GD G PG + G GA
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGE----PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAK 862
Query: 85 GGRAAA----------ALWRAGSPNPENPRYPP 107
G R +A A R G P P PP
Sbjct: 863 GARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP 895
Score = 30.0 bits (66), Expect = 3.3
Identities = 28/89 (31%), Positives = 31/89 (34%), Gaps = 17/89 (19%)
Query: 51 PSGARGG-------GDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENP 103
P G RG GD G G R FS G P G G +G+ P P
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQG--------PSGASGPAGP 1140
Query: 104 RYPPPSHQHQHEKLDALEGCSSPITAAQP 132
R PP S + D L G PI P
Sbjct: 1141 RGPPGSAGAPGK--DGLNGLPGPIGPPGP 1167
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 53 GARGG-GDPGRPGARAFSAASCQAGRPWRCGAAGGRA-AAALWRAGSPNPENPR 104
G RG G PG GAR A+ AG P G AG A+ G P+ PR
Sbjct: 308 GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPR 361
Score = 29.3 bits (64), Expect = 5.7
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPWRCGA 83
PPG P + + P G + +GA G G PG PGAR S G P G
Sbjct: 375 PPG--PAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGN 432
Query: 84 AGGRAAAA----LWRAGSPNPENPRYPP 107
+G A G P P + PP
Sbjct: 433 SGEPGAPGSKGDTGAKGEPGPVGVQGPP 460
Score = 28.9 bits (63), Expect = 7.5
Identities = 30/109 (27%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 26 PGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAG 85
PG R + P P G P GD G PGA A G P GA
Sbjct: 682 PGERGVQGPPGPAGPRGANGA----PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA-- 735
Query: 86 GRAAAALWRAGSPNPENPRYPP-PSHQHQHEKLDALEGCSSPITAAQPA 133
AG P P+ R P D + G + PI PA
Sbjct: 736 ---------AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPA 775
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.5 bits (88), Expect = 0.009
Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEM----VRRPSGARGG-GDPGRPGARAFSAASCQAGRPW 79
PPG + P P GE R P GA+G G+PG PG+ + AS G
Sbjct: 355 PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 414
Query: 80 RCGAAGGRAAAALWRAGSPNPENPRYPP 107
GA G A + AG+P PR PP
Sbjct: 415 IPGAKGSAGAPGI--AGAPGFPGPRGPP 440
Score = 38.1 bits (87), Expect = 0.012
Identities = 31/90 (34%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 26 PGRRPMSSRPLSRTPPHGGGEMVRRPSGARG----GGDPGRPGARAFSAASCQAGRPWRC 81
PG R + P GE R PSG G GDPGRPG A GRP
Sbjct: 512 PGNRGFPGQDGLAGPKGAPGE--RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 569
Query: 82 GAAG----GRAAAALWRAGSPNPENPRYPP 107
G G A R G P P+ R P
Sbjct: 570 GPQGKVGPSGAPGEDGRPGPPGPQGARGQP 599
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGG-GDPGRPGARAFSAASCQAGRPWRCGA 83
PPG P +R TP G + R G G G+ G PG + S + + G P G
Sbjct: 268 PPG--PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 325
Query: 84 AG-----GR-----AAAALWRAGSPNPENPRYP 106
G GR AA A G P P P P
Sbjct: 326 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP 358
Score = 30.0 bits (66), Expect = 3.3
Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 26 PGRRPMSSRPLSRTP-----PHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWR 80
PG R ++ RP P P G RP G G+PG F G P +
Sbjct: 557 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 616
Query: 81 CGAAGGRAAAAL----------WRAGSPNPENP 103
G G A L AG P P P
Sbjct: 617 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGP 649
Score = 30.0 bits (66), Expect = 3.3
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 21 AFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRP-- 78
A QK P P S P G V P GARG P PGA F A+ + G P
Sbjct: 854 AGQKGDAGAPGPQGP-SGAPGPQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVGPPGS 910
Query: 79 -------------WRCGAAGGRA-AAALWRAGSPNPENPRYPP 107
+ G G R + RAG P + P PP
Sbjct: 911 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP 953
Score = 28.9 bits (63), Expect = 7.5
Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRR-PSGARGG-------------GDPGRPGARAFSA 70
PPGR PP GE PSGA G G PG+ G R F
Sbjct: 937 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG 996
Query: 71 ASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPP 107
+G P + GA G +G P P PP
Sbjct: 997 LPGPSGEPGKQGAPGA--------SGDRGPPGPVGPP 1025
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.5 bits (88), Expect = 0.009
Identities = 31/88 (35%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEM----VRRPSGARGG-GDPGRPGARAFSAASCQAGRPW 79
PPG + P P GE R P GA+G G+PG PG+ + AS G
Sbjct: 286 PPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDG 345
Query: 80 RCGAAGGRAAAALWRAGSPNPENPRYPP 107
GA G A + AG+P PR PP
Sbjct: 346 IPGAKGSAGAPGI--AGAPGFPGPRGPP 371
Score = 38.1 bits (87), Expect = 0.012
Identities = 31/90 (34%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 26 PGRRPMSSRPLSRTPPHGGGEMVRRPSGARG----GGDPGRPGARAFSAASCQAGRPWRC 81
PG R + P GE R PSG G GDPGRPG A GRP
Sbjct: 443 PGNRGFPGQDGLAGPKGAPGE--RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 500
Query: 82 GAAG----GRAAAALWRAGSPNPENPRYPP 107
G G A R G P P+ R P
Sbjct: 501 GPQGKVGPSGAPGEDGRPGPPGPQGARGQP 530
Score = 31.2 bits (69), Expect = 1.5
Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGG-GDPGRPGARAFSAASCQAGRPWRCGA 83
PPG P +R TP G + R G G G+ G PG + S + + G P G
Sbjct: 199 PPG--PQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGP 256
Query: 84 AG-----GR-----AAAALWRAGSPNPENPRYP 106
G GR AA A G P P P P
Sbjct: 257 RGLPGERGRTGPAGAAGARGNDGQPGPAGPPGP 289
Score = 30.0 bits (66), Expect = 3.3
Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 26 PGRRPMSSRPLSRTP-----PHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWR 80
PG R ++ RP P P G RP G G+PG F G P +
Sbjct: 488 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 547
Query: 81 CGAAGGRAAAAL----------WRAGSPNPENP 103
G G A L AG P P P
Sbjct: 548 AGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGP 580
Score = 30.0 bits (66), Expect = 3.3
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 21 AFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRP-- 78
A QK P P S P G V P GARG P PGA F A+ + G P
Sbjct: 785 AGQKGDAGAPGPQGP-SGAPGPQGPTGVTGPKGARGAQGP--PGATGFPGAAGRVGPPGS 841
Query: 79 -------------WRCGAAGGRA-AAALWRAGSPNPENPRYPP 107
+ G G R + RAG P + P PP
Sbjct: 842 NGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPP 884
Score = 28.9 bits (63), Expect = 7.5
Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRR-PSGARGG-------------GDPGRPGARAFSA 70
PPGR PP GE PSGA G G PG+ G R F
Sbjct: 868 PPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG 927
Query: 71 ASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPP 107
+G P + GA G +G P P PP
Sbjct: 928 LPGPSGEPGKQGAPGA--------SGDRGPPGPVGPP 956
>gi|31982895 THAP domain containing 4 [Homo sapiens]
Length = 577
Score = 38.1 bits (87), Expect = 0.012
Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 55 RGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQH 114
RG G GR R A+ G AA GR AA W S NP P S +
Sbjct: 92 RGAGGHGR--TRRKDASKATGGVRGHSSAATGRGAAG-WSPSSSG--NPMAKPESRRL-- 144
Query: 115 EKLDALEGCSSPITAAQPASGFRLHRALERFPLGEIHTNPEVRGGCGSCRGVWNETDGNS 174
K AL+G ++P A + AS + +ALER P + T V G G + S
Sbjct: 145 -KQAALQGEATPRAAQEAASQEQAQQALERTPGDGLAT--MVAGSQGKAEASATDAGDES 201
Query: 175 QSVNVSSGIRQRHRI 189
+ ++ G+ + I
Sbjct: 202 ATSSIEGGVTDKSGI 216
>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
Length = 747
Score = 37.7 bits (86), Expect = 0.016
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 11/136 (8%)
Query: 7 SPNRSARKYSTRSAAFQKPPGRRPMSSRP-LSRTPPHGGGEMVRRPSGARGGGDPGRPGA 65
SP+ + S+ +P +RP P L R+P GG R A G PG A
Sbjct: 14 SPSAAGADREAASSPAGEPLRKRPRRDGPGLERSPGEPGGAAPEREVPAAARGCPGAAAA 73
Query: 66 RAFSAASCQAGRPWRCGAAGGRAAAALWRAG----SPNPENPRYPPPSHQHQHEKLDALE 121
+ A +A A G + A A AG P + P PP + +++ D E
Sbjct: 74 ALWREAEAEA-----AAAGGEQEAQATAAAGEGDNGPGLQGPSREPPLADNLYDEDDDDE 128
Query: 122 GCSSPITAAQPASGFR 137
G AA A G+R
Sbjct: 129 G-EEEEEAAAAAIGYR 143
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 37.7 bits (86), Expect = 0.016
Identities = 34/127 (26%), Positives = 43/127 (33%), Gaps = 17/127 (13%)
Query: 3 ISASSPNRSARKYSTRSAAFQ---KPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGD 59
++ SS S+ S + F KP GRRP R PP G P G
Sbjct: 11 LALSSAESSSEDVSQEESLFLISGKPEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQG 70
Query: 60 P--------GRP--GARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPS 109
P GRP G G+P R GG + + P P P PPP
Sbjct: 71 PPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQS----QGTPPPPGKPERPPPQ 126
Query: 110 HQHQHEK 116
+Q +
Sbjct: 127 GGNQSHR 133
Score = 28.5 bits (62), Expect = 9.7
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 8 PNRSARKYSTRSAAFQKPPGR--RP------MSSRPL------SRTPPHGGGEMVRRPSG 53
P R + +S PPG+ RP S RP R PP GG + P
Sbjct: 99 PERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPH 158
Query: 54 -ARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPPS 109
+ G P + G ++ SA S G+P G G P P P+ PPP+
Sbjct: 159 PGKPEGPPPQEGNKSRSARS-PPGKPQGPPQQEGNKPQ-----GPPPPGKPQGPPPA 209
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 37.4 bits (85), Expect = 0.021
Identities = 36/130 (27%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 19 SAAFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRP 78
+A++ P R + + P HG + P G RGG PGRP A +
Sbjct: 70 TASYYAPRTAREPAYPAAALYPAHGAADTAY-PYGYRGGASPGRPPQPEQPPAQAK---- 124
Query: 79 WRCGAAGGRAAAALWRAGSPNPENPRYPPPSHQHQHEKLDALEGCSSPITAAQPASGFRL 138
G A G A+ + + P P PR PP+ + E A G P + PA L
Sbjct: 125 ---GPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGV--PAGGSAPACPLLL 179
Query: 139 HRALERFPLG 148
++ PLG
Sbjct: 180 ---ADKSPLG 186
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.0 bits (84), Expect = 0.027
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAA 84
PPG + + P + PP G+ P G PG PG + + A + G P GA
Sbjct: 634 PPGPQGLQGLPGTGGPPGENGKP-GEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAP 692
Query: 85 GGRAAAALWRAGSPNPE 101
G R AG P PE
Sbjct: 693 GLRGG-----AGPPGPE 704
Score = 33.1 bits (74), Expect = 0.40
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 26 PGRRPMSSRPLSRTPPHGGGEM-VRRPSGARGG-GDPGRPGARAFSAASCQAGRPWRCGA 83
PG + P PP G G P G +G G PG PGA F A G P G
Sbjct: 830 PGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGN 889
Query: 84 AGGRAAAALWRAGSPNPENPRYP 106
G +GSP + P P
Sbjct: 890 PGPPGP-----SGSPGKDGPPGP 907
Score = 32.7 bits (73), Expect = 0.52
Identities = 28/84 (33%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 26 PGRRPMSSRPLSRTPPHGGGEMVRRPSGARGG--GDPGRPGARAFSAASCQAGRPWRCGA 83
PG S P PP G S G GD G+PG + A G P G
Sbjct: 890 PGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGI 949
Query: 84 AGGRAAAALWRAGSPNPENPRYPP 107
AG A L AG P PR P
Sbjct: 950 AGITGARGL--AGPPGMPGPRGSP 971
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 53 GARG----GGDPGRPGARAFSAASCQAGRPWRCGAAG-----GRAAAALWRAGSPNPENP 103
GA+G G PG PGA A+ + G P G AG G A R G+P P P
Sbjct: 459 GAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGER-GAPGPAGP 517
Query: 104 R 104
R
Sbjct: 518 R 518
Score = 30.0 bits (66), Expect = 3.3
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 25 PPGRRPMSSRPLSR----TPPHGGGEMVRRPSGARG-GGDPGRPGARAFSAASCQAGRPW 79
PPG + P R P G + P G RG G PG PGA+ G P
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPG 474
Query: 80 R---CGAAGGRAAAALWRAGSPN 99
GAAG R A PN
Sbjct: 475 ANGLPGAAGERGAPGFRGPAGPN 497
Score = 30.0 bits (66), Expect = 3.3
Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 40 PPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPN 99
PP GE RP G G+PG F G P + G GG G P
Sbjct: 553 PPGSQGES-GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGG--------PGGPG 603
Query: 100 PENP 103
P+ P
Sbjct: 604 PQGP 607
Score = 29.3 bits (64), Expect = 5.7
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 44 GGEMVRRPSGARGG----GDPGRPGARAFSAASCQAGRPWRCGAAGGRAAAALWRAGSPN 99
GG+ R +G+ G G PG PG + S G G AG A G+P
Sbjct: 1029 GGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAG--SRGAPG 1086
Query: 100 PENPR 104
P+ PR
Sbjct: 1087 PQGPR 1091
Score = 28.9 bits (63), Expect = 7.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 58 GDPGRPGARAFSAASCQAGRPWRCGAAGGRA-AAALWRAGSPNPENP 103
G+ G PG A + GRP GAAG R A G P P P
Sbjct: 291 GENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGP 337
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 25 PPGRRPMSSRPLSRTP--PHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCG 82
PPG + S RP P P G ++ P G PG+ G R G P + G
Sbjct: 553 PPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNG 612
Query: 83 AAGGRAAAALWRAGSPNPENP 103
G + G P P P
Sbjct: 613 ETGPQ--------GPPGPTGP 625
Score = 28.5 bits (62), Expect = 9.7
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 25 PPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFSAASCQAGRPWRCGAA 84
P G R + P R GG M P G G G+PG + ++GRP G +
Sbjct: 514 PAGPRGAAGEP-GRDGVPGGPGMRGMPGSPGGPGSDGKPGP---PGSQGESGRPGPPGPS 569
Query: 85 GGRAAAALWRAGSPNPE 101
G R + G P P+
Sbjct: 570 GPRGQPGV--MGFPGPK 584
>gi|169202970 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 37.0 bits (84), Expect = 0.027
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 10 RSARKYSTRSAAFQKPPGRRPMSSRPLSRTPPHGGGEMVRRPSGARGGGDPGRPGARAFS 69
RS R + SAA PP P+SSR P GG P G RPGAR F
Sbjct: 27 RSVRLWPDISAA---PPPPHPLSSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGAR-FG 82
Query: 70 AASCQAGRPWRCGAAGGRAAAALWRAGSPNPENPRYPPP 108
AA C R R + A + +G+P P P++ PP
Sbjct: 83 AARCHQSRENRLVS----PAESDKMSGTPLPP-PQFSPP 116
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,378,147
Number of Sequences: 37866
Number of extensions: 1281598
Number of successful extensions: 7431
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 393
Number of HSP's that attempted gapping in prelim test: 6019
Number of HSP's gapped (non-prelim): 1731
length of query: 359
length of database: 18,247,518
effective HSP length: 103
effective length of query: 256
effective length of database: 14,347,320
effective search space: 3672913920
effective search space used: 3672913920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.