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Search of human proteins with 239755068
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755068 PREDICTED: hypothetical protein [Homo sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755068 PREDICTED: hypothetical protein [Homo sapiens] 416 e-117
gi|239749592 PREDICTED: hypothetical protein [Homo sapiens] 416 e-117
gi|239743859 PREDICTED: hypothetical protein [Homo sapiens] 416 e-117
gi|50962882 G patch domain containing 8 [Homo sapiens] 39 0.002
gi|55741655 anoctamin 8 [Homo sapiens] 37 0.009
gi|49410495 TSPY-like 5 [Homo sapiens] 37 0.012
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 36 0.026
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 36 0.026
gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo sap... 35 0.034
gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo sap... 35 0.034
gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo sap... 35 0.034
gi|9966841 cell death regulator aven [Homo sapiens] 35 0.045
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 34 0.076
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 34 0.099
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 33 0.13
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 33 0.13
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 33 0.13
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 33 0.13
gi|24497620 signal recognition particle 68kDa [Homo sapiens] 33 0.13
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 33 0.17
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 33 0.17
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 33 0.17
gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo sa... 33 0.17
gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 33 0.22
gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 33 0.22
gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens] 33 0.22
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 32 0.29
>gi|239755068 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 416 bits (1070), Expect = e-117
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA 60
MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA
Sbjct: 1 MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA 60
Query: 61 EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG 120
EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG
Sbjct: 61 EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG 120
Query: 121 RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS 180
RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS
Sbjct: 121 RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS 180
Query: 181 LSRNPRGPGRVSFEFMAALCRALFG 205
LSRNPRGPGRVSFEFMAALCRALFG
Sbjct: 181 LSRNPRGPGRVSFEFMAALCRALFG 205
>gi|239749592 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 416 bits (1070), Expect = e-117
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA 60
MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA
Sbjct: 1 MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA 60
Query: 61 EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG 120
EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG
Sbjct: 61 EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG 120
Query: 121 RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS 180
RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS
Sbjct: 121 RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS 180
Query: 181 LSRNPRGPGRVSFEFMAALCRALFG 205
LSRNPRGPGRVSFEFMAALCRALFG
Sbjct: 181 LSRNPRGPGRVSFEFMAALCRALFG 205
>gi|239743859 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 416 bits (1070), Expect = e-117
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA 60
MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA
Sbjct: 1 MPPPPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMA 60
Query: 61 EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG 120
EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG
Sbjct: 61 EHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGG 120
Query: 121 RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS 180
RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS
Sbjct: 121 RGCDGEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRS 180
Query: 181 LSRNPRGPGRVSFEFMAALCRALFG 205
LSRNPRGPGRVSFEFMAALCRALFG
Sbjct: 181 LSRNPRGPGRVSFEFMAALCRALFG 205
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 39.3 bits (90), Expect = 0.002
Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 16/164 (9%)
Query: 37 KKREKEQGGKKETERKER-----KAVWMAEHVRFHMTSVPVSGSTMPRLLSAQPPIRAQQ 91
+K K + G+K +RK+R K+ A+ R P SGS P + +Q+
Sbjct: 697 EKSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQR 756
Query: 92 R-LERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGEFETVRTGQRRRADRESRADPQVTG 150
R L G E GGG+ + D G R +G R +R+ R S +G
Sbjct: 757 RSLPAEEGSSGKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSG 816
Query: 151 TSDSS--------REGDTDHGKPSEARDAGLPGFHVRSLSRNPR 186
DS ++ + + + E D+G H RS SR+ R
Sbjct: 817 DEDSDDASSHRLHQKSPSQYSEEEEEEDSG--SEHSRSRSRSGR 858
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 37.4 bits (85), Expect = 0.009
Identities = 35/118 (29%), Positives = 46/118 (38%), Gaps = 13/118 (11%)
Query: 80 LLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGEFETVRTGQRRRAD 139
LLS + P A +RLE GG GG G G + + GG G E E +RRRA
Sbjct: 515 LLSLRRP--APRRLEPQADEGG----GGGSGGGGRRCLSGGCGAPEEEEEAALVERRRAG 568
Query: 140 RESRADPQVTG-----TSDSSREGDTDHGKPSEARDAGL--PGFHVRSLSRNPRGPGR 190
G D E + + E + GL G ++ +S RG GR
Sbjct: 569 EGGEEGDGPPGGKEEDEDDEEEEDEEEEEDEEEGEEGGLLDCGLRLKKVSFAERGAGR 626
>gi|49410495 TSPY-like 5 [Homo sapiens]
Length = 417
Score = 37.0 bits (84), Expect = 0.012
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 86 PIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGR---GCDGEFETVRTGQRRRADRES 142
P A + R GP G E AG G Q + GGR G GE +V G+ ++ +R++
Sbjct: 132 PKNAPRVGNRRGPAGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDA 191
Query: 143 RADPQVT-GTSDS 154
+ P T G+ D+
Sbjct: 192 GSGPPATEGSMDT 204
>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 35.8 bits (81), Expect = 0.026
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 85 PPIRAQQRLERLGP------RGGDVVEAGGGAGAGDQGVRGGRGCDG----EFETVRTGQ 134
P + +Q + L P R D+ GGG GAG G GG G G E+ R
Sbjct: 25 PRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAG--GAEGGAGGAGRARERAESGRPCG 82
Query: 135 RRRADRESRADPQVTGTSDSSREGDTDHGK---PSEARDAGLPGFHVRSLSRNPRGPGR 190
RRR + A + G ++R GK P+ + G G S + R PGR
Sbjct: 83 RRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGR 141
>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 35.8 bits (81), Expect = 0.026
Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 85 PPIRAQQRLERLGP------RGGDVVEAGGGAGAGDQGVRGGRGCDG----EFETVRTGQ 134
P + +Q + L P R D+ GGG GAG G GG G G E+ R
Sbjct: 25 PRLSGKQAINDLQPTSAKEDRDCDIKGGGGGGGAG--GAEGGAGGAGRARERAESGRPCG 82
Query: 135 RRRADRESRADPQVTGTSDSSREGDTDHGK---PSEARDAGLPGFHVRSLSRNPRGPGR 190
RRR + A + G ++R GK P+ + G G S + R PGR
Sbjct: 83 RRRHPQAEPAPKEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGR 141
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 35.8 bits (81), Expect = 0.026
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 75 STMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDG--------- 125
S + LLS I A+Q+ G + GD AGGG G G G G G G
Sbjct: 199 SNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAP 258
Query: 126 EFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGL 173
+ T + + +R D G S E + +H + ++A D L
Sbjct: 259 QENTTSEAGLPQGEARTRDDGDEEGLLTHSEE-ELEHSQDTDADDGAL 305
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 35.8 bits (81), Expect = 0.026
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 75 STMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDG--------- 125
S + LLS I A+Q+ G + GD AGGG G G G G G G
Sbjct: 183 SNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAP 242
Query: 126 EFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGL 173
+ T + + +R D G S E + +H + ++A D L
Sbjct: 243 QENTTSEAGLPQGEARTRDDGDEEGLLTHSEE-ELEHSQDTDADDGAL 289
>gi|239753758 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 35.4 bits (80), Expect = 0.034
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 73 SGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGEFETVRT 132
+G + R + PP+R R R G+ +AGGGA AG R F T+
Sbjct: 99 AGRDLARDVENPPPLRGGAR-----SRCGESRQAGGGARAGSGLPRRMPRPPIAFATLER 153
Query: 133 GQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRSLSRNPRGP 188
+ R+ S Q +D DHG + A G G H R L R P
Sbjct: 154 AKERKRQPPSPPPKQ----TDKKLSFSYDHGLCAPAAGGGQGGAHTRKLPRARASP 205
>gi|169166137 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 35.4 bits (80), Expect = 0.034
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 73 SGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGEFETVRT 132
+G + R + PP+R R R G+ +AGGGA AG R F T+
Sbjct: 99 AGRDLARDVENPPPLRGGAR-----SRCGESRQAGGGARAGSGLPRRMPRPPIAFATLER 153
Query: 133 GQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRSLSRNPRGP 188
+ R+ S Q +D DHG + A G G H R L R P
Sbjct: 154 AKERKRQPPSPPPKQ----TDKKLSFSYDHGLCAPAAGGGQGGAHTRKLPRARASP 205
>gi|169165128 PREDICTED: hypothetical protein LOC401106 [Homo
sapiens]
Length = 297
Score = 35.4 bits (80), Expect = 0.034
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 73 SGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGEFETVRT 132
+G + R + PP+R R R G+ +AGGGA AG R F T+
Sbjct: 99 AGRDLARDVENPPPLRGGAR-----SRCGESRQAGGGARAGSGLPRRMPRPPIAFATLER 153
Query: 133 GQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRSLSRNPRGP 188
+ R+ S Q +D DHG + A G G H R L R P
Sbjct: 154 AKERKRQPPSPPPKQ----TDKKLSFSYDHGLCAPAAGGGQGGAHTRKLPRARASP 205
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 35.0 bits (79), Expect = 0.045
Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 103 VVEAGGGAGAGDQGVRGGRGCDGEFETVRTGQ-RRRADRESRADPQVTGTSDSSR-EGDT 160
V GGG G GD G R GRG F R G+ A R SR +P G S+ E D+
Sbjct: 35 VARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDS 94
Query: 161 DHGKPSEARD 170
D E D
Sbjct: 95 DAETYGEEND 104
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 34.3 bits (77), Expect = 0.076
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 19 EEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVWMAEHVRFHMTSVPVSGSTMP 78
EE Q++E+E L+ KKR+KE KKE +K + V S P + S P
Sbjct: 34 EESKQEKEQEREEQLMEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAAS--P 91
Query: 79 RLLSAQPPIRAQQRLERLGPRGG 101
S PP+ +R+ G
Sbjct: 92 IGSSPSPPVNGGNNAKRVAVPNG 114
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 33.9 bits (76), Expect = 0.099
Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 14/165 (8%)
Query: 4 PPAQKISFVITWTEEEEEGQQQEEELVVVLLVTKKREKEQG---GKKETERKERKAVWM- 59
P A+ + WTEE+ + + ++ ++ R E+ + E E K W+
Sbjct: 1829 PGAEAVIGSWCWTEEKADIVSRPDDKDEATTASRSRAGEEAMICSRIEAENKASSGSWIR 1888
Query: 60 AEHVRFHMTSVPV-SGSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVR 118
+E V + + V +G+ A+ A G G AG GAG G +
Sbjct: 1889 SEEVAYMGSCVGAEAGAGAEAGAGAEAGAGA-------GAEAGAEAGAGAGAGPGTESGA 1941
Query: 119 GGRGCDGEFETV--RTGQRRRADRESRADPQVTGTSDSSREGDTD 161
G DG+ TV R G A ES + G + SRE D
Sbjct: 1942 GVWSWDGDATTVESRLGAGEEAGVESWTLARNVGEDELSRESSPD 1986
>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 33.5 bits (75), Expect = 0.13
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 86 PIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGEFETVRTGQRRRADRESRAD 145
P+ A + L GG GGGAG + G G E+ R RRR + A
Sbjct: 8 PVLAAETLNNHKGGGG-----GGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAP 62
Query: 146 PQVTGTSDSSREGDTDHGK---PSEARDAGLPGFHVRSLSRNPRGPGR 190
+ G ++R GK P+ + G G S + R PGR
Sbjct: 63 KEFQGDGAAARADALTAGKSAEPAPGGEGGERGEESASERESERAPGR 110
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 33.5 bits (75), Expect = 0.13
Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 16/182 (8%)
Query: 12 VITWTEEEEEGQQQEEELVVV---LLVTKKREKEQGGKKETERKERKAVWMAEHVRFHMT 68
+I T+ E+E + EE L + L V+ K EK++ +++ E E AE
Sbjct: 456 IIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPE------AEEEEVAAK 509
Query: 69 SVPVSGSTMPRLLSAQPPIRAQQRLERLGPRG----GDVVEAGGGAGAGDQGVRGGRGCD 124
PV +T P + + ++ E D E GG G G +
Sbjct: 510 KSPVK-ATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEE 568
Query: 125 GEFETVRTGQRRRADRESRADPQVTGTSDSSR-EGDTDHGKPSEARDAGLPGFHVRSLSR 183
GE E G+ A E + + + + D KP +A+ + +P V +
Sbjct: 569 GETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAK-SPVPKSPVEEKGK 627
Query: 184 NP 185
+P
Sbjct: 628 SP 629
Score = 27.7 bits (60), Expect = 7.1
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 18 EEEEGQQQEEELVVVLLVTKK---REKEQGGKKETERKERKAVWMAEHVRFHMT-SVPVS 73
E +G+Q+EEE V K+ +KE+ K E+K+ ++ E V +T + V
Sbjct: 695 EVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVK 754
Query: 74 GSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGR----GCDGEFET 129
P++ ++ E+ G GG E D+G +G R +GE E
Sbjct: 755 VHLEKETKEEGKPLQQEKEKEKAGGEGGSEEE------GSDKGAKGSRKEDIAVNGEVEG 808
Query: 130 VRTGQRRRADRESRADPQ---VTGTSDSSREGDTDHGKPSEAR 169
++ ++ S + + VT D S + G SE +
Sbjct: 809 KEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEK 851
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 33.5 bits (75), Expect = 0.13
Identities = 40/182 (21%), Positives = 68/182 (37%), Gaps = 16/182 (8%)
Query: 12 VITWTEEEEEGQQQEEELVVV---LLVTKKREKEQGGKKETERKERKAVWMAEHVRFHMT 68
+I T+ E+E + EE L + L V+ K EK++ +++ E E AE
Sbjct: 80 IIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPE------AEEEEVAAK 133
Query: 69 SVPVSGSTMPRLLSAQPPIRAQQRLERLGPRG----GDVVEAGGGAGAGDQGVRGGRGCD 124
PV +T P + + ++ E D E GG G G +
Sbjct: 134 KSPVK-ATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEE 192
Query: 125 GEFETVRTGQRRRADRESRADPQVTGTSDSSR-EGDTDHGKPSEARDAGLPGFHVRSLSR 183
GE E G+ A E + + + + D KP +A+ + +P V +
Sbjct: 193 GETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAK-SPVPKSPVEEKGK 251
Query: 184 NP 185
+P
Sbjct: 252 SP 253
Score = 27.7 bits (60), Expect = 7.1
Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 17/163 (10%)
Query: 18 EEEEGQQQEEELVVVLLVTKK---REKEQGGKKETERKERKAVWMAEHVRFHMT-SVPVS 73
E +G+Q+EEE V K+ +KE+ K E+K+ ++ E V +T + V
Sbjct: 319 EVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVKEEAVAEVVTITKSVK 378
Query: 74 GSTMPRLLSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGR----GCDGEFET 129
P++ ++ E+ G GG E D+G +G R +GE E
Sbjct: 379 VHLEKETKEEGKPLQQEKEKEKAGGEGGSEEE------GSDKGAKGSRKEDIAVNGEVEG 432
Query: 130 VRTGQRRRADRESRADPQ---VTGTSDSSREGDTDHGKPSEAR 169
++ ++ S + + VT D S + G SE +
Sbjct: 433 KEEVEQETKEKGSGREEEKGVVTNGLDLSPADEKKGGDKSEEK 475
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 33.5 bits (75), Expect = 0.13
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 33/186 (17%)
Query: 19 EEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERK-AVWMAEHVRFHMT--------- 68
EE G+ + + V+L V K+++ +Q K+ +++E+ AV +H H
Sbjct: 688 EEAGRAEMLDHAVLLQVIKEQQVQQ--KRLLDQQEKLLAVIEEQHKEIHQQRQEDEEDKP 745
Query: 69 -SVPVS---GSTMPRLLSAQPPIRAQQRLERLGPRGGD-VVEAGGGAGAGDQGVR----- 118
V V G+ +PR A P +A++ +E L P D V+ A GG A Q +
Sbjct: 746 RQVEVHQEPGAAVPRGQEA-PEGKARETVENLPPLPLDPVLRAPGGRPAPSQDLNQRSLE 804
Query: 119 ---GGRGCD-------GEFETVRTGQRRRADRESRADPQVTGTSDSSREGDTDHGKPSEA 168
G G D G R Q + D + A P+ GT +G P A
Sbjct: 805 HSEGPVGRDPAGPPDGGPDTEPRAAQAKLRDGQKDAAPRAAGTVKELPKGPEQVPVPDPA 864
Query: 169 RDAGLP 174
R+AG P
Sbjct: 865 REAGGP 870
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 17 EEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKER----KAVWMAEHVRFHMTS--V 70
EEEEEG+++EEE ++ E+E+ ++E E ++R K+ + + T
Sbjct: 364 EEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQRGQGEKSATPSRKILDPNTGEPA 423
Query: 71 PVSGSTMPRLLSAQPPIRAQQRLERLGPRGGDVV 104
PV S P +S + ++L RLGP+ ++
Sbjct: 424 PVLSSPPPADVSTFLAFPSPEKLLRLGPKSSVLI 457
>gi|24497620 signal recognition particle 68kDa [Homo sapiens]
Length = 627
Score = 33.5 bits (75), Expect = 0.13
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 94 ERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGE--FETVRTGQRRRADRE 141
E+ P GG +GGG G+G G GGRG GE E R +A++E
Sbjct: 4 EKQVPGGGGGGGSGGGGGSGGGGSGGGRGAGGEENKENERPSAGSKANKE 53
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.17
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 97 GPRGGDVVEAGGGAGAGDQGVRGGRGCDGEF-ETVRTGQRRRADRESRADPQVTGTSDSS 155
GPRG E G GD+G+ G RG G E + G SR DP D+
Sbjct: 451 GPRGL-AGEVGNKGAKGDRGLPGPRGPQGALGEPGKQG--------SRGDP-----GDAG 496
Query: 156 REGDTDHGKPSEARDAGLPGF 176
GD+ G+P D G PGF
Sbjct: 497 PRGDS--GQPGPKGDPGRPGF 515
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 33.1 bits (74), Expect = 0.17
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 97 GPRGGDVVEAGGGAGAGDQGVRGGRGCDGEF-ETVRTGQRRRADRESRADPQVTGTSDSS 155
GPRG E G GD+G+ G RG G E + G SR DP D+
Sbjct: 451 GPRGL-AGEVGNKGAKGDRGLPGPRGPQGALGEPGKQG--------SRGDP-----GDAG 496
Query: 156 REGDTDHGKPSEARDAGLPGF 176
GD+ G+P D G PGF
Sbjct: 497 PRGDS--GQPGPKGDPGRPGF 515
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 33.1 bits (74), Expect = 0.17
Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 97 GPRGGDVVEAGGGAGAGDQGVRGGRGCDGEF-ETVRTGQRRRADRESRADPQVTGTSDSS 155
GPRG E G GD+G+ G RG G E + G SR DP D+
Sbjct: 451 GPRGL-AGEVGNKGAKGDRGLPGPRGPQGALGEPGKQG--------SRGDP-----GDAG 496
Query: 156 REGDTDHGKPSEARDAGLPGF 176
GD+ G+P D G PGF
Sbjct: 497 PRGDS--GQPGPKGDPGRPGF 515
>gi|83035129 coiled-coil domain containing 108 isoform 1 [Homo
sapiens]
Length = 1925
Score = 33.1 bits (74), Expect = 0.17
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 18 EEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERK 55
EEE+G+++EEEL ++ E+E+ GK+E E KE +
Sbjct: 1764 EEEKGEEEEEELEEEEEEEEETEEEELGKEEIEEKEEE 1801
Score = 27.3 bits (59), Expect = 9.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 17 EEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAVW 58
EEEEE + +EEEL +E+ + ++E + KE K W
Sbjct: 1778 EEEEEEETEEEEL--------GKEEIEEKEEERDEKEEKVSW 1811
>gi|169161779 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 0.22
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 EEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAV 57
EE+ E + +EEE V +L ++ KR GG K ++K + AV
Sbjct: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAV 156
>gi|169161624 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 0.22
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 EEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAV 57
EE+ E + +EEE V +L ++ KR GG K ++K + AV
Sbjct: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAV 156
>gi|169162829 PREDICTED: similar to nucleophosmin 1 [Homo sapiens]
Length = 186
Score = 32.7 bits (73), Expect = 0.22
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 17 EEEEEGQQQEEELVVVLLVTKKREKEQGGKKETERKERKAV 57
EE+ E + +EEE V +L ++ KR GG K ++K + AV
Sbjct: 116 EEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAV 156
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 32.3 bits (72), Expect = 0.29
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 11/119 (9%)
Query: 81 LSAQPPIRAQQRLERLGPRGGDVVEAGGGAGAGDQGVRGGRGCDGE-----FETVRTGQR 135
L +P +R + + L R G+ EAG G GVRG +G GE ++ +
Sbjct: 260 LPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGLKGDRG 319
Query: 136 RRADRESRADPQVTGTSD---SSREGDTDHGKPSEARDAGL---PGFHVRSLSRNPRGP 188
+ + P + GT+ + G E D GL PG R P+GP
Sbjct: 320 EKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGP 378
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,051,399
Number of Sequences: 37866
Number of extensions: 534927
Number of successful extensions: 4912
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 4182
Number of HSP's gapped (non-prelim): 736
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.