Guide to the Human Genome
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Name: LOC100130911 Sequence: fasta or formatted (205aa) NCBI GI: 239743859
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {205aa} PREDICTED: hypothetical protein
alt mRNA {205aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         15           2
 C cysteine            1.0          2           1
 D aspartate           4.4          9           1
 E glutamate          10.7         22           5
 F phenylalanine       3.4          7           1
 G glycine            12.7         26           3
 H histidine           2.0          4           1
 I isoleucine          1.5          3           1
 K lysine              4.4          9           2
 L leucine             5.4         11           2
 M methionine          2.4          5           1
 N asparagine          0.5          1           1
 P proline             6.8         14           4
 Q glutamine           5.4         11           3
 R arginine           11.7         24           3
 S serine              6.3         13           2
 T threonine           5.4         11           1
 V valine              7.8         16           3
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130911          1.000   PREDICTED: hypothetical protein 
LOC100130911          1.000   PREDICTED: hypothetical protein 
GPATCH8               0.036   G patch domain containing 8 
ANO8                  0.031   anoctamin 8 
TSPYL5                0.031   TSPY-like 5 
LOC100131851          0.028   PREDICTED: hypothetical protein 
LOC100130751          0.028   PREDICTED: hypothetical protein 
RALY                  0.028   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.028   RNA binding protein (autoantigenic, hnRNP-associated...
FLJ34208              0.026   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.026   PREDICTED: hypothetical protein LOC401106 
FLJ34208              0.026   PREDICTED: hypothetical protein LOC401106 
AVEN                  0.026   cell death regulator aven 
TNRC6B                0.023   trinucleotide repeat containing 6B isoform 3 
LOC100292655          0.023   PREDICTED: similar to armadillo repeat containing, ...
LOC100131851          0.020   PREDICTED: hypothetical protein 
NEFM                  0.020   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.020   neurofilament, medium polypeptide 150kDa isoform 2 ...
SLC38A10              0.020   solute carrier family 38, member 10 isoform a 
RANGAP1               0.020   Ran GTPase activating protein 1 
SRP68                 0.020   signal recognition particle 68kDa 
COL6A2                0.020   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.020   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.020   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
CCDC108               0.020   coiled-coil domain containing 108 isoform 1 
LOC440577             0.020   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.020   PREDICTED: similar to nucleophosmin 1 
LOC440577             0.020   PREDICTED: similar to nucleophosmin 1 
LOC100293055          0.018   PREDICTED: similar to COL22A1 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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