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Search of human proteins with 239755004
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]
(558 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755004 PREDICTED: hypothetical protein [Homo sapiens] 1159 0.0
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ... 1050 0.0
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ... 888 0.0
gi|197333868 T-box 2 [Homo sapiens] 49 9e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 43 9e-04
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 42 0.001
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 42 0.002
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 40 0.004
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 40 0.006
gi|226498192 atonal homolog 8 [Homo sapiens] 40 0.007
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.007
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.007
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 40 0.007
gi|115511036 alpha-kinase 3 [Homo sapiens] 40 0.007
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 39 0.010
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 39 0.010
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.010
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 39 0.010
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 39 0.013
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 39 0.016
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 38 0.021
gi|169790811 SHC (Src homology 2 domain containing) transforming... 38 0.021
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 38 0.028
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 38 0.028
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 38 0.028
gi|23510413 sorting nexin 26 [Homo sapiens] 38 0.028
gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens] 38 0.028
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 37 0.037
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 37 0.037
>gi|239755004 PREDICTED: hypothetical protein [Homo sapiens]
Length = 558
Score = 1159 bits (2999), Expect = 0.0
Identities = 558/558 (100%), Positives = 558/558 (100%)
Query: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA
Sbjct: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
Query: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT 120
ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT
Sbjct: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT 120
Query: 121 GVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGWSRVL 180
GVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGWSRVL
Sbjct: 121 GVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGWSRVL 180
Query: 181 AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS 240
AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS
Sbjct: 181 AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS 240
Query: 241 CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW 300
CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW
Sbjct: 241 CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW 300
Query: 301 VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL 360
VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL
Sbjct: 301 VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL 360
Query: 361 TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ 420
TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ
Sbjct: 361 TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ 420
Query: 421 LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEW 480
LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEW
Sbjct: 421 LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEW 480
Query: 481 GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEP 540
GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEP
Sbjct: 481 GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEP 540
Query: 541 GSEAFWDSTIVKARLYQD 558
GSEAFWDSTIVKARLYQD
Sbjct: 541 GSEAFWDSTIVKARLYQD 558
>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
sapiens]
Length = 522
Score = 1050 bits (2716), Expect = 0.0
Identities = 514/558 (92%), Positives = 516/558 (92%), Gaps = 36/558 (6%)
Query: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA
Sbjct: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
Query: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT 120
ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT
Sbjct: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT 120
Query: 121 GVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGWSRVL 180
S S ++ GQ RSSFRPGWSRVL
Sbjct: 121 A-SPGCSEEVHGQ-----------------------------------RSSFRPGWSRVL 144
Query: 181 AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS 240
AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS
Sbjct: 145 AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS 204
Query: 241 CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW 300
CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW
Sbjct: 205 CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW 264
Query: 301 VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL 360
VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL
Sbjct: 265 VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL 324
Query: 361 TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ 420
TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ
Sbjct: 325 TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ 384
Query: 421 LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEW 480
LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEW
Sbjct: 385 LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEW 444
Query: 481 GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEP 540
GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEP
Sbjct: 445 GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEP 504
Query: 541 GSEAFWDSTIVKARLYQD 558
GSEAFWDSTIVKARLYQD
Sbjct: 505 GSEAFWDSTIVKARLYQD 522
>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
sapiens]
Length = 443
Score = 888 bits (2294), Expect = 0.0
Identities = 434/479 (90%), Positives = 437/479 (91%), Gaps = 36/479 (7%)
Query: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA
Sbjct: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
Query: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT 120
ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT
Sbjct: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPT 120
Query: 121 GVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGWSRVL 180
S S ++ GQ RSSFRPGWSRVL
Sbjct: 121 A-SPGCSEEVHGQ-----------------------------------RSSFRPGWSRVL 144
Query: 181 AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS 240
AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS
Sbjct: 145 AKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGGWDDAPAVLHHPCVWPPLHS 204
Query: 241 CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW 300
CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW
Sbjct: 205 CCLTRPVYYPLTRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAW 264
Query: 301 VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL 360
VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL
Sbjct: 265 VQPPQLHDQTREGQLVVQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPL 324
Query: 361 TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ 420
TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ
Sbjct: 325 TSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQ 384
Query: 421 LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEE 479
LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTE+
Sbjct: 385 LRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTED 443
>gi|197333868 T-box 2 [Homo sapiens]
Length = 712
Score = 49.3 bits (116), Expect = 9e-06
Identities = 41/118 (34%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Query: 31 APRGRTHLPGVARCPWRLHGAAFAPP--ASQAALASAGSRRCAPAALCSSGGCALTRRAA 88
+P G HLPG+A LHG F P A Q G P A + G L A
Sbjct: 458 SPLGAGHLPGLAFSS-HLHGQQFFGPLGAGQPLFLHPGQFTMGPGAFSAMGMGHLLASVA 516
Query: 89 CGGRGGGTRAGQG-GRGAWGEAPVGSAALSSPTGVSHLLSSQLRGQG-ALESCGGILP 144
GG GGG G G A G P SAA ++ HL L QG + + GG+ P
Sbjct: 517 GGGNGGGGGPGTAAGLDAGGLGPAASAASTAAPFPFHLSQHMLASQGIPMPTFGGLFP 574
Score = 30.8 bits (68), Expect = 3.4
Identities = 36/125 (28%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 338 DGAFGTLGSAPRPAAPLPALCPLTSVLPRQLRYLFALEDE-ALRTQPEPDDLGQHRCDSQ 396
DGA S P A P P + P +L A E A + PEP+ L + R +
Sbjct: 316 DGAESDASSCDPPPAREPPTSPGAAPSPLRLHRARAEEKSCAADSDPEPERLSEERAGAP 375
Query: 397 EQRGPRPPPAHGPLHPGGRPGTAQLRREP--GPEALRSRPRSPPAAHEALPRHRRGTARP 454
R P P A P P A+ RR P G E S P +L + R R
Sbjct: 376 LGRSPAPDSA-SPTRL-TEPERARERRSPERGKEPAES-GGDGPFGLRSLEKERAEARRK 432
Query: 455 DQSER 459
D+ +
Sbjct: 433 DEGRK 437
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 42.7 bits (99), Expect = 9e-04
Identities = 68/238 (28%), Positives = 85/238 (35%), Gaps = 44/238 (18%)
Query: 317 VQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPA--APLPALCPLTSVLPRQLRYLFAL 374
VQP RR G PR+ GA +A P AP P P+ + P + A
Sbjct: 99 VQPPRR----GATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAA 154
Query: 375 EDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGP-LHPGGRPGTAQLRREPGPE-ALRS 432
A P P G + P P PA P + P P RR P P A R
Sbjct: 155 AATA-PPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGP-----RRAPPPAVAARE 208
Query: 433 RPRSPPAAHEALPRHRR------------GTARPDQSERPGHLGTALRLNHFLGGSTEEW 480
P PP A P+ ++ G R + RP L +R +LGGS
Sbjct: 209 PPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVR---YLGGS---- 261
Query: 481 GGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCG----DSETQNGRARPSSLA 534
GGA G + GR QGL A L R G + GRA P++ A
Sbjct: 262 GGA-------GGRLTRGRVQGLLEEEAAARGRLERTRLGALALPRGDRPGRAPPAASA 312
Score = 30.0 bits (66), Expect = 5.8
Identities = 21/69 (30%), Positives = 26/69 (37%)
Query: 6 AEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASA 65
A P G AA + P P+ P AR P AA APP+ A
Sbjct: 110 APPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGP 169
Query: 66 GSRRCAPAA 74
++R AP A
Sbjct: 170 RAQRAAPLA 178
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 42.4 bits (98), Expect = 0.001
Identities = 49/170 (28%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 347 APRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPA 406
AP+P + P PL+ + L L L A R PEP + + +S ++R P PP
Sbjct: 964 APKPTSQTPPASPLSKLSRPYLVEL--LSRRAGRPDPEPSEPSKEDQESSDRRPPSPP-- 1019
Query: 407 HGPLHPGGRPGTAQLRREPGPEALRSRPRSP--PAAHEALPRHRRGTARPDQSERPGHLG 464
GP G+ +R+ EA +P SP PA + P T + E+P
Sbjct: 1020 -GPEERKGQ------KRDEEEEATERKPASPPLPATQQEKPSQ---TPEAGRKEKP---- 1065
Query: 465 TALRLNHFLGGS--TEE-------WGGAAQGRQGGGAKSPSGRCQGLQAR 505
L+ H L GS TE+ W A +Q G + + R + QAR
Sbjct: 1066 -MLQSRHSLDGSKLTEKVETAQPLWITLALQKQKGFREQQATREERKQAR 1114
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/109 (34%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Query: 330 AGTGPRSGDGAFGTLGSAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLG 389
A GP G AP P AP P P + L L L A A PEP LG
Sbjct: 2 AHRGPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGAC--GAAGRSPEPGRLG 59
Query: 390 QHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPEALRSRPRSPP 438
H +Q R PR PPA G PGG EPG P P
Sbjct: 60 PH---AQLTRVPRSPPA-GRAEPGGGEDRQARGTEPGAPGPSPGPAPGP 104
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 40.4 bits (93), Expect = 0.004
Identities = 51/161 (31%), Positives = 66/161 (40%), Gaps = 29/161 (18%)
Query: 401 PRPPPAHGPLHPGGRPG--------TAQLRREPGPEALRSRPRSPPAAHEAL--PRHRRG 450
P PP G GGRP TA +PGP A +R R P A A PR R
Sbjct: 181 PTPPRQEGSF--GGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSR 238
Query: 451 TARPDQSERPGHLGTALRLN-------HFLGGSTEEWGGAAQGRQGGGAKSPS--GR-CQ 500
ARP + PG L A R F GG E A + GGG ++P GR
Sbjct: 239 AARPPPAPGPGALSRASRSRAAGRPGPGFHGG---EKAAAPRAPGGGGGRNPGALGRAAP 295
Query: 501 GLQARSD---LASATLHTDRCGDSETQNGRARPSSLAGEAD 538
+AR D L+ R GD + + G ++P + +G +
Sbjct: 296 PSRARQDAWGLSGCATVGLRRGDCD-RAGSSQPPATSGNGE 335
Score = 37.7 bits (86), Expect = 0.028
Identities = 55/209 (26%), Positives = 73/209 (34%), Gaps = 34/209 (16%)
Query: 6 AEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASA 65
A P G G+ R AP RA + L G A R G +SQ S
Sbjct: 274 AAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLR-RGDCDRAGSSQPPATSG 332
Query: 66 GSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWG---EAPVGSAALSSPTGV 122
RC C RR GG G GT A G G + VG+A L + +G
Sbjct: 333 NGERCR--------FCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGAAVLRAGSGE 384
Query: 123 SHLLSSQL-----RGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGWS 177
QL R GAL+ GG L + +S R+ R G S
Sbjct: 385 GSRRGLQLTPPPRRVHGALQRFGGGRNLKSN---------------WMSTTRTPRRSGAS 429
Query: 178 --RVLAKEVGGELKPEAPSIGAKSIEEGE 204
+++A + G +P IG + G+
Sbjct: 430 GPKMVADQTSGISRPPTAGIGTSRLCLGD 458
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 40.4 bits (93), Expect = 0.004
Identities = 59/199 (29%), Positives = 69/199 (34%), Gaps = 27/199 (13%)
Query: 321 RRQRGGGVRA----GTGPRSGDGAFGTL--------GSAPRPAAPLPALCPLTSVLPRQL 368
RR+ G G G GP G G TL GSA + P+L + P
Sbjct: 37 RRRAGEGAAGRRDGGWGPPGGAGDHQTLQRASLLPGGSADKDQEREPSLAARGTAPPAPP 96
Query: 369 RYLFALE----DEALRTQPEPDDLGQHRCDSQEQRGPR-----PPPAHGPLHPGGRPGTA 419
R LR +P P RC GPR PPPA P G+ A
Sbjct: 97 RQCLPTPCPPLGHGLRPRPPPGT-PPPRCPRTLAPGPRGLFPAPPPAPARTGPAGK--AA 153
Query: 420 QLRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEE 479
R PGP A R RSP L + R G P L A+RL GGS E+
Sbjct: 154 ADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLG---GGSREK 210
Query: 480 WGGAAQGRQGGGAKSPSGR 498
GR + GR
Sbjct: 211 LACGRAGRAARTGRGEGGR 229
Score = 32.7 bits (73), Expect = 0.90
Identities = 37/108 (34%), Positives = 43/108 (39%), Gaps = 28/108 (25%)
Query: 12 TGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGSRRCA 71
TGP G+ AA+ RP P+ GR V R P +F P LA R
Sbjct: 146 TGPAGKAAADRGRPGPA----AGRR----VRRSP------SFPP----FLLAQTRLGRTG 187
Query: 72 PAALC--------SSGGCALTRRAACG--GRGGGTRAGQGGRGAWGEA 109
P ALC G + ACG GR T G+GGR A EA
Sbjct: 188 PLALCLLLLLHGAMRLGGGSREKLACGRAGRAARTGRGEGGRRAEEEA 235
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 40.0 bits (92), Expect = 0.006
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 334 PRSGDGAFGTLGSAPRPAAPLPA-------LCPLTSVLPRQLRYLFALEDEALR---TQP 383
P + GT P PLP L +V PR R + AL +E L+ QP
Sbjct: 557 PGAEPSTSGTTDEEPEELRPLPEEGEERRRLGAEPTVRPRG-RSMQALAEEDLQHLPPQP 615
Query: 384 EPDDLGQHRCDSQEQRGPRP-PPAHGPLHPGGRPGTAQLRREPGPEALRSRPRS--PPAA 440
P L Q S+ + P P P+H PLH G RP RRE P + + S PP
Sbjct: 616 LPPQLSQGDGRSETSQPPTPGSPSHSPLHSGPRP----RRRESDPTGPQRQVFSVAPPFE 671
Query: 441 HEALPR 446
LPR
Sbjct: 672 VNGLPR 677
Score = 29.3 bits (64), Expect = 10.0
Identities = 43/186 (23%), Positives = 59/186 (31%), Gaps = 39/186 (20%)
Query: 267 ILGQRGVQKAHGAHPATRIHEHPLQLLVGQHVAWVQPPQLHDQTREGQLVVQPWRRQRGG 326
+ Q+ ++HGA PA L + + PP G R ++
Sbjct: 1168 VAAQQPASRSHGAAPA-------LDTAITSRLQLQTPP--------GSATAADLRPKQPP 1212
Query: 327 GVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPD 386
G G GP G + RP AP P ++ R + + R P P
Sbjct: 1213 G--RGLGP-------GRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSP- 1262
Query: 387 DLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPEALRSRPRSPPAAHEALPR 446
S + R PPP P P AQ P P + PR A A +
Sbjct: 1263 --------SHQARPGVPPPRGVP------PARAQPDGTPSPGGSKKGPRGKLQAQRATTK 1308
Query: 447 HRRGTA 452
R G A
Sbjct: 1309 GRAGGA 1314
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 39.7 bits (91), Expect = 0.007
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 401 PRPPPAHGPLHPGGRPGTAQLRREPG--PEALRSRP--RSPPAAHEALPRHRRGTARPDQ 456
P PPPA PGG AQ REPG P L P R P+A A P T RP
Sbjct: 126 PPPPPAPQSQAPGGPE--AQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAP 183
Query: 457 SERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGGAKSPSGRCQGL-QARSDLASATLHT 515
RPG + ++H + + ++ A+ ++ G A + S + L Q R LA+A T
Sbjct: 184 PTRPGE-SSYSSISHVIYNNHQD-SSASPRKRPGEATAASSEIKALQQTRRLLANARERT 241
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 39.7 bits (91), Expect = 0.007
Identities = 70/238 (29%), Positives = 84/238 (35%), Gaps = 47/238 (19%)
Query: 327 GVRAGTGPRSGDGAFGTLGSAPRPAAPLPALC---PLTSVLPRQLRYLFALEDEALRTQP 383
G TG R +GA G G P +P PA P T +P A +
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPG-----------AKGSAG 423
Query: 384 EPDDLGQHRCDSQEQRGPRPPP----AHGPLHPGGR---PGTAQLRREPGP--EALRSRP 434
P G + GPR PP A GPL P G+ PG A + E GP E + P
Sbjct: 424 APGIAG-----APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 478
Query: 435 RSPPA-AHEALPRHRRG-------TARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQG 486
+ P A E R RG P + PG+ G F G A G
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG-------FPGQDGLAGPKGAPG 531
Query: 487 RQG-GGAKSPSGR--CQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEPG 541
+G G P G G L A T R GD+ Q G+ PS GE PG
Sbjct: 532 ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQ-GKVGPSGAPGEDGRPG 588
Score = 33.5 bits (75), Expect = 0.53
Identities = 45/148 (30%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 321 RRQRGG-GVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCP-LTSVLPRQLRYLFALEDEA 378
R RG G + GPR DG GT G+ P P P P L Q+ F +++A
Sbjct: 134 RGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF--DEKA 191
Query: 379 LRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPEALRSRPRSPP 438
Q LG +GP GP+ P G PG A PGP+ + P P
Sbjct: 192 GGAQ-----LGV-------MQGPM-----GPMGPRGPPGPAGA---PGPQGFQGNPGEPG 231
Query: 439 AAHEALPRHRRGTARPDQSERPGHLGTA 466
+ P RG P +PG G A
Sbjct: 232 EPGVSGPMGPRGP--PGPPGKPGDDGEA 257
Score = 33.1 bits (74), Expect = 0.69
Identities = 34/121 (28%), Positives = 43/121 (35%), Gaps = 29/121 (23%)
Query: 400 GPRPPPAHGPLHPG-----GRPGTAQLRREPGPEALRSRPRSP----------------P 438
GPR PP P PG G+PG A R PGP+ R P +P
Sbjct: 240 GPRGPPGP-PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGA 298
Query: 439 AAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWG--GAAQGRQGGGAKSPS 496
P + + P ++ PG +G L G G GAA R G P+
Sbjct: 299 KGEAGAPGVKGESGSPGENGSPGPMGP-----RGLPGERGRTGPAGAAGARGNDGQPGPA 353
Query: 497 G 497
G
Sbjct: 354 G 354
Score = 29.6 bits (65), Expect = 7.6
Identities = 36/136 (26%), Positives = 42/136 (30%), Gaps = 25/136 (18%)
Query: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
++G PGT G DG + A P + P G +PG A A P
Sbjct: 715 LQGPRGLPGT-PGTDGPKGASGPAGPPGAQGPPGLQGMPG------ERGAAGIAGPKGDR 767
Query: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGG-----------GTRAGQGGRGAWGE- 108
AP GG LT G G G G RGA GE
Sbjct: 768 GDVGEKGPEGAPG---KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 824
Query: 109 ---APVGSAALSSPTG 121
P G A + P G
Sbjct: 825 GETGPPGPAGFAGPPG 840
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 39.7 bits (91), Expect = 0.007
Identities = 70/238 (29%), Positives = 84/238 (35%), Gaps = 47/238 (19%)
Query: 327 GVRAGTGPRSGDGAFGTLGSAPRPAAPLPALC---PLTSVLPRQLRYLFALEDEALRTQP 383
G TG R +GA G G P +P PA P T +P A +
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPG-----------AKGSAG 354
Query: 384 EPDDLGQHRCDSQEQRGPRPPP----AHGPLHPGGR---PGTAQLRREPGP--EALRSRP 434
P G + GPR PP A GPL P G+ PG A + E GP E + P
Sbjct: 355 APGIAG-----APGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 435 RSPPA-AHEALPRHRRG-------TARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQG 486
+ P A E R RG P + PG+ G F G A G
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRG-------FPGQDGLAGPKGAPG 462
Query: 487 RQG-GGAKSPSGR--CQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEPG 541
+G G P G G L A T R GD+ Q G+ PS GE PG
Sbjct: 463 ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQ-GKVGPSGAPGEDGRPG 519
Score = 33.5 bits (75), Expect = 0.53
Identities = 45/148 (30%), Positives = 57/148 (38%), Gaps = 26/148 (17%)
Query: 321 RRQRGG-GVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCP-LTSVLPRQLRYLFALEDEA 378
R RG G + GPR DG GT G+ P P P P L Q+ F +++A
Sbjct: 65 RGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGF--DEKA 122
Query: 379 LRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPEALRSRPRSPP 438
Q LG +GP GP+ P G PG A PGP+ + P P
Sbjct: 123 GGAQ-----LGV-------MQGPM-----GPMGPRGPPGPAGA---PGPQGFQGNPGEPG 162
Query: 439 AAHEALPRHRRGTARPDQSERPGHLGTA 466
+ P RG P +PG G A
Sbjct: 163 EPGVSGPMGPRGP--PGPPGKPGDDGEA 188
Score = 33.1 bits (74), Expect = 0.69
Identities = 34/121 (28%), Positives = 43/121 (35%), Gaps = 29/121 (23%)
Query: 400 GPRPPPAHGPLHPG-----GRPGTAQLRREPGPEALRSRPRSP----------------P 438
GPR PP P PG G+PG A R PGP+ R P +P
Sbjct: 171 GPRGPPGP-PGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGA 229
Query: 439 AAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWG--GAAQGRQGGGAKSPS 496
P + + P ++ PG +G L G G GAA R G P+
Sbjct: 230 KGEAGAPGVKGESGSPGENGSPGPMGP-----RGLPGERGRTGPAGAAGARGNDGQPGPA 284
Query: 497 G 497
G
Sbjct: 285 G 285
Score = 29.6 bits (65), Expect = 7.6
Identities = 36/136 (26%), Positives = 42/136 (30%), Gaps = 25/136 (18%)
Query: 1 MEGGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQA 60
++G PGT G DG + A P + P G +PG A A P
Sbjct: 646 LQGPRGLPGT-PGTDGPKGASGPAGPPGAQGPPGLQGMPG------ERGAAGIAGPKGDR 698
Query: 61 ALASAGSRRCAPAALCSSGGCALTRRAACGGRGG-----------GTRAGQGGRGAWGE- 108
AP GG LT G G G G RGA GE
Sbjct: 699 GDVGEKGPEGAPG---KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER 755
Query: 109 ---APVGSAALSSPTG 121
P G A + P G
Sbjct: 756 GETGPPGPAGFAGPPG 771
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 39.7 bits (91), Expect = 0.007
Identities = 43/129 (33%), Positives = 51/129 (39%), Gaps = 33/129 (25%)
Query: 20 AESRRPAPSLRA---PRGRTHL------PGVARCPWRLHG-----------AAFAPPASQ 59
A S RP + RA P R L PG+ + P G AA A AS
Sbjct: 313 ATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASS 372
Query: 60 AALASA----GSRRCA---------PAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAW 106
AA A A GS C+ AA ++ AL R GG GGG G GG GA
Sbjct: 373 AAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAG 432
Query: 107 GEAPVGSAA 115
G + G +A
Sbjct: 433 GGSDFGCSA 441
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 39.7 bits (91), Expect = 0.007
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 3 GGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAAL 62
G GA PG GT R R G+ + AR P ++ A P A AA
Sbjct: 118 GLGAGPGAGTWAPAPPGVSKPRCPGRARPGEGQQQVT-TARPP-AINRGARQPRAGAAAA 175
Query: 63 A---SAGSRRCAPAALCSS-----GGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSA 114
AG+ R AA + GG +RRA G G G R+G GG G + PV
Sbjct: 176 GRGPGAGAWRTGEAAASAGPAVGEGGAMGSRRAPSRGWGAGGRSGAGGDGE-DDGPVW-- 232
Query: 115 ALSSPTGVSHLLS 127
+ SP S+LLS
Sbjct: 233 -IPSPASRSYLLS 244
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 39.3 bits (90), Expect = 0.010
Identities = 36/130 (27%), Positives = 45/130 (34%), Gaps = 15/130 (11%)
Query: 323 QRGGGVRAGTGP-RSGDGAFGTLGSAPRPAAPLPALC-------------PLTSVLPRQL 368
Q+GGG G G R A GT A +P P LC P +P
Sbjct: 8 QQGGGGGGGQGRHRHSSRAPGTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPP 67
Query: 369 RYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPE 428
P P G+ + Q RPP +H PL GG G + + P P
Sbjct: 68 AAAHPARPALRGETPAPGRRGRATTRGEVQPSVRPPLSHRPLRGGGM-GRGRPGKGPPPN 126
Query: 429 ALRSRPRSPP 438
R P +PP
Sbjct: 127 PSRRLPPAPP 136
Score = 34.3 bits (77), Expect = 0.31
Identities = 39/118 (33%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 389 GQHRCDSQEQRGPRPP--PAHGPLHPGGRPGTAQLRREPGPEALRSRPRSPPAAHEALPR 446
G+HR S+ G R P PA P P P A R + A + P P AAH A P
Sbjct: 18 GRHRHSSRAP-GTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPAAAHPARPA 76
Query: 447 HRRGTARPDQSERP---GHLGTALR--LNHFLGGSTEEWGGAAQGRQG-GGAKSPSGR 498
R T P + R G + ++R L+H GG +GR G G +PS R
Sbjct: 77 LRGETPAPGRRGRATTRGEVQPSVRPPLSH----RPLRGGGMGRGRPGKGPPPNPSRR 130
Score = 33.9 bits (76), Expect = 0.40
Identities = 37/117 (31%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 2 EGGGAEPGTGTGPDGQEAAESRRPAPSLRAPR----GRTHLPGVARCPWRLHGAAFAPPA 57
+GGG G G A +R PA R+PR PG A+ P GA +PPA
Sbjct: 9 QGGGGGGGQGRHRHSSRAPGTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPA 68
Query: 58 SQAALASAGSRRCAPAALCSSGGCALTRRAACGG----------RGGGTRAGQGGRG 104
+ A A R PA G A TR RGGG G+ G+G
Sbjct: 69 A-AHPARPALRGETPAP--GRRGRATTRGEVQPSVRPPLSHRPLRGGGMGRGRPGKG 122
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 39.3 bits (90), Expect = 0.010
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 8/117 (6%)
Query: 12 TGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGSRRCA 71
+ P G E++ + P PG+ ++ PA+ AA A+A + A
Sbjct: 417 SSPQGSESSPAASSGYESSTP------PGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAA 470
Query: 72 PAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPTGVSHLLSS 128
+A+ GG A GG GGG+ +G GG GA G S S G LSS
Sbjct: 471 VSAVHRGGGSG--SGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSS 525
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.3 bits (90), Expect = 0.010
Identities = 51/223 (22%), Positives = 76/223 (34%), Gaps = 17/223 (7%)
Query: 317 VQPWRRQRGGGVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPLTSVLPRQLRYLFALED 376
+ P R + G PR+ A S+P P AP P P S + +
Sbjct: 1591 LSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPE 1650
Query: 377 EALRTQPEPDDLGQHRCDSQEQRG---PRPPPAHGPLHPGGRPGTAQLRREPGPEALRSR 433
+ T+ P+ + R + R P+ P R R+ RS
Sbjct: 1651 GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSA 1710
Query: 434 PRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGGAK 493
SP PRHRR + S P + R S R+G +
Sbjct: 1711 SSSPETRSRTPPRHRRSPS--VSSPEPAEKSRSSRRRR----SASSPRTKTTSRRG---R 1761
Query: 494 SPSGRCQGLQ-----ARSDLASATLHTDRCGDSETQNGRARPS 531
SPS + +GLQ +R + T DR G S++ + R + S
Sbjct: 1762 SPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRS 1804
Score = 36.2 bits (82), Expect = 0.081
Identities = 41/129 (31%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 337 GDGAFGTLG--SAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCD 394
GD F G S RP++P A +S P + + E A R P P+
Sbjct: 306 GDAPFSEPGTTSTQRPSSPETATKQPSS--PYEDKDKDKKEKSATRPSPSPE-------- 355
Query: 395 SQEQRGPRPPPAHGPL---HPGGRP---GTAQLRREP---GPEALRSRPRSPPAAHEALP 445
+ GP PP A PL GG P T L +EP EA +R RSPP + E LP
Sbjct: 356 -RSSTGPEPP-APTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLP 413
Query: 446 RHRRGTARP 454
+ + P
Sbjct: 414 QSSSSESSP 422
Score = 32.0 bits (71), Expect = 1.5
Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 26/167 (15%)
Query: 377 EALRTQPEPDDLGQHRCDSQEQRGPRPPP------AHGPLHPGGRPGTAQLRREPG--PE 428
E+ P+P + +H S E P P P + P G A+ + P
Sbjct: 419 ESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPS 478
Query: 429 ALRSRPRSPPAAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQ 488
R RSP A R R T R R + +W + ++
Sbjct: 479 RRMGRSRSPATAKRGRSRSRTPTKRGHSRSR-----------------SPQWRRSRSAQR 521
Query: 489 GGGAKSPSGRCQGLQARSDLASATLHTDRCGDSET-QNGRARPSSLA 534
G ++SP R + + S + +T R G S + + GR+ S A
Sbjct: 522 WGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPA 568
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 39.3 bits (90), Expect = 0.010
Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 25/128 (19%)
Query: 3 GGGAEPGTGTGPDG---------------QEAAESRRPAPSLRAPRGRTHLPGVARCPWR 47
GGGA G+GP + ++ S P+PS A G PG A
Sbjct: 246 GGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRSSEPSPSRDASPGGPGGPGFASTDIS 305
Query: 48 LHGAAFAPPASQAALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWG 107
++ + P A AG+ A+ + GG A GG GGG G GG GA
Sbjct: 306 MYTLSRDPSKGSVAAGLAGAGGGGGGAVGAFGG-------AAGGAGGG---GGGGGGAGA 355
Query: 108 EAPVGSAA 115
E G A+
Sbjct: 356 ERDRGGAS 363
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 38.9 bits (89), Expect = 0.013
Identities = 55/221 (24%), Positives = 82/221 (37%), Gaps = 36/221 (16%)
Query: 336 SGDGAFGTLGSAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLGQ--HRC 393
+G G TL S P P PAL L+ LP Q R + A +A P LG+ R
Sbjct: 52 AGRGPCATLRS--HPITPAPALLLLSHSLPAQRRSMQATVAKA--GSPGRGRLGKEPRRR 107
Query: 394 DSQEQRGPRPPPAHGP---------LHPGGRPGTAQLRREPGPEALRSR------PRSPP 438
+S + PR P P R G + R G +A +SR PR
Sbjct: 108 ESWTRSAPRRCPYQDASRAGSRVCRSRPQNRGGGDKKPRRRGQKAAKSRGGGGKKPRGQK 167
Query: 439 AAHEALPRHRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGGAKSPSGR 498
AA +HR+ R +++ GG + AA+ R GGG K+ +
Sbjct: 168 AAGAGAKKHRKPRRRGERAAA-------------AGGKKLQKAAAAKSRGGGGKKTAA-- 212
Query: 499 CQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADE 539
G + R + GD + + +A + + D+
Sbjct: 213 AGGKKPRRRRGQKAAKSRGGGDKKLERQKAALTGVKSRGDK 253
Score = 30.4 bits (67), Expect = 4.5
Identities = 41/171 (23%), Positives = 58/171 (33%), Gaps = 26/171 (15%)
Query: 50 GAAFAPPASQAALASAGSRRCAPAA----LCSSGGCALTRRAACGGRGGGTRAGQGGRGA 105
G P Q A + + P ++GG L + AA RGGG + G
Sbjct: 157 GGGGKKPRGQKAAGAGAKKHRKPRRRGERAAAAGGKKLQKAAAAKSRGGGGKKTAAAGGK 216
Query: 106 WGEAPVGSAALSSPTGVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLL 165
G A S G L Q ++S G PL ++ ++
Sbjct: 217 KPRRRRGQKAAKSRGGGDKKLERQKAALTGVKSRGDKKPLRGGKKQRERG---------- 266
Query: 166 SIRRSSFRPGWSRVLAKEVGGELKPEAPSIGAKSI-EEGEEVLGAEDSVGQ 215
+ + R G GGE +A + GAKS GE+ AE GQ
Sbjct: 267 --QNTKSRGG---------GGEKPQKAAAAGAKSRGGRGEKPQKAEAGQGQ 306
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 38.5 bits (88), Expect = 0.016
Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 17/171 (9%)
Query: 376 DEALRTQPEPDDLGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPEALRSRPR 435
+E P P G HR + ++ + P+ PA G G R G+ R P + R++ R
Sbjct: 192 EEEAAAAPAPTSRG-HRTEKRKPQQPQCRPAGGT---GQRRGS---RSSPSADQQRAQDR 244
Query: 436 SPPAAHEALPR---HRRGTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGGA 492
AA P HR +P Q +R GT R S ++ G + + A
Sbjct: 245 EEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSGYSPSADQQGAQDREEEAAAA 304
Query: 493 KSPSGRCQGLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEPGSE 543
+P+ + R L L G + G+ R S + A++ G++
Sbjct: 305 PAPTSSGHRTEKRKRL---QLQCQPAGGT----GQRRGSGCSSSANQQGAQ 348
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 38.1 bits (87), Expect = 0.021
Identities = 59/221 (26%), Positives = 73/221 (33%), Gaps = 21/221 (9%)
Query: 327 GVRAGTGPRSGDGAFGTLGSAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPD 386
G+R GP G G G P P P + E ++ T P P
Sbjct: 764 GIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPP 823
Query: 387 DLGQHRCDSQEQRGPRPPPAHGPLHPGGRPG---TAQLRREPGPEALRSRPRSPPAAHEA 443
P PP A GP P G PG L+ PGP PR PP
Sbjct: 824 G------PPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPG----PRGPPGPSIP 873
Query: 444 LPRHRRGTARPDQSERPGHLGTALRLNH-FLGGSTEEWG-GAAQGRQG-GGAKSPSGRCQ 500
P RG PG G+ L + FL G G +G QG G + G Q
Sbjct: 874 GPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGE-Q 932
Query: 501 GLQARSDLASATLHTDRCGDSETQNGRARPSSLAGEADEPG 541
GL S S++ + G G P G+ +PG
Sbjct: 933 GLPGFSTSGSSSFGLNLQGPP----GPPGPQGPKGDKGDPG 969
Score = 32.7 bits (73), Expect = 0.90
Identities = 96/394 (24%), Positives = 125/394 (31%), Gaps = 76/394 (19%)
Query: 90 GGRGGGTRAGQGGRGAWGEAPVGSAALSSPTGVSHLLSSQLRGQGALESCGGILPLAAQR 149
GG GGG G G G WG AP S + LL L L G++ LA +
Sbjct: 433 GGSGGGGGVGGAGGGPWGPAPAWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLIALAEEV 492
Query: 150 RSMDKASGYVRACPLLSIRRSSFRPGWSRVLAKEVGGELKPEAPSIGAKSIEEG------ 203
R + R L IRRS G S + + L+ AP+ GA + G
Sbjct: 493 RKLK-----ARVDELERIRRSILPYGDS--MDRIEKDRLQGMAPAAGADLDKIGLHSDSQ 545
Query: 204 EEV--------------------------LGAEDSVGQREGQGGWDDAPAVLHHPCVW-- 235
EE+ +G+ G R G G P L HP
Sbjct: 546 EELWMFVRKKLMMEQENGNLRGSPGPKGDMGSPGPKGDR-GFPGTPGIPGPLGHPGPQGP 604
Query: 236 ---------PPLHSCCLTRPVYYPL-TRVAAGAQGGAEEQHILGQRGVQKAHGAHPATRI 285
P + R P+ R AG G E+ G+RG G H +
Sbjct: 605 KGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEK----GERGAAGEPGPHGPPGV 660
Query: 286 HEHPLQLLVGQHVAWVQPPQLHDQTREGQLVVQPWRRQRG-GGVRAGTGPRSGDGAFGTL 344
VG + P Q G + +Q R + G GV+ GP G G
Sbjct: 661 PGS-----VGPKGSSGSP---GPQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQ 712
Query: 345 G-SAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRP 403
G PR P + L A+ + + P H+ EQ
Sbjct: 713 GEKGPRGLTGEPGMRGLPG----------AVGEPGAKGAMGPAGPDGHQGPRGEQGLTGM 762
Query: 404 PPAHGPLHPGGRPGTAQLRREPGPEALRSRPRSP 437
P GP P G PG L GP+ L P P
Sbjct: 763 PGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRP 796
>gi|169790811 SHC (Src homology 2 domain containing) transforming
protein 2 [Homo sapiens]
Length = 582
Score = 38.1 bits (87), Expect = 0.021
Identities = 39/123 (31%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 4 GGAEPGTGTGPDGQEAAES------RRPAPSLRAPRGRTHL-PGVARCPWRLHGAAFAP- 55
GG P P EA + R P AP G P AR GA P
Sbjct: 6 GGRAPPAPPAPPEPEAPTTFCALLPRMPQWKFAAPGGFLGRGPAAARAAGASGGADPQPE 65
Query: 56 ---PASQAALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVG 112
P ALA+A C P + C L + C RG G+R +GGRGA G
Sbjct: 66 PAGPGGVPALAAAVLGACEPRC---AAPCPLPALSRC--RGAGSRGSRGGRGAAGSGDAA 120
Query: 113 SAA 115
+AA
Sbjct: 121 AAA 123
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 37.7 bits (86), Expect = 0.028
Identities = 36/110 (32%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 408 GPLHPGGRPGTAQLRREPGPEALRSRPRSP----PAAHEALP--RHRRGTARPDQSERPG 461
GP P G PG+A R EPGP P +P P LP + RGT PG
Sbjct: 1778 GPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPG 1837
Query: 462 HLGTALRLNHFLGGSTEEWG-GAAQGRQGG----GAKSPSGRCQGLQARS 506
G GST G GR G G P G C Q S
Sbjct: 1838 PPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCAS 1887
Score = 30.4 bits (67), Expect = 4.5
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 333 GPRSGDGAFGTLGSAPRPAAP-LPALC--PLTSVLPRQL--RYLFALEDEALRTQPEPDD 387
GP GA G G RP P P + P LP + R + L P P
Sbjct: 1784 GPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQ- 1842
Query: 388 LGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGP 427
G+ R G R PP P GRPG + +R PGP
Sbjct: 1843 -GESRTGPPGSTGSRGPPG-----PPGRPGNSGIRGPPGP 1876
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 37.7 bits (86), Expect = 0.028
Identities = 36/110 (32%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 408 GPLHPGGRPGTAQLRREPGPEALRSRPRSP----PAAHEALP--RHRRGTARPDQSERPG 461
GP P G PG+A R EPGP P +P P LP + RGT PG
Sbjct: 2942 GPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPG 3001
Query: 462 HLGTALRLNHFLGGSTEEWG-GAAQGRQGG----GAKSPSGRCQGLQARS 506
G GST G GR G G P G C Q S
Sbjct: 3002 PPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCAS 3051
Score = 30.4 bits (67), Expect = 4.5
Identities = 32/100 (32%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 333 GPRSGDGAFGTLGSAPRPAAP-LPALC--PLTSVLPRQL--RYLFALEDEALRTQPEPDD 387
GP GA G G RP P P + P LP + R + L P P
Sbjct: 2948 GPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQ- 3006
Query: 388 LGQHRCDSQEQRGPRPPPAHGPLHPGGRPGTAQLRREPGP 427
G+ R G R PP P GRPG + +R PGP
Sbjct: 3007 -GESRTGPPGSTGSRGPPG-----PPGRPGNSGIRGPPGP 3040
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 37.7 bits (86), Expect = 0.028
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 50 GAAFAPPASQAALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEA 109
G A AP A+ AA AS P CS CA + A G + AG+ G +
Sbjct: 18 GPARAPAAAAAAAAS-------PPGPCSGAACAPSAAAGAGAMNPSSSAGEEKGATGGSS 70
Query: 110 PVGSAALSSPTGVSHLLSSQLRGQGALESCGGIL---PLAAQRRSMDKA 155
GS A S G + RG G+ + G P AA ++ D+A
Sbjct: 71 SSGSGAGSCCLGAEG--GADPRGAGSAAAAGAAALDEPAAAGQKEKDEA 117
Score = 37.0 bits (84), Expect = 0.048
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 18/104 (17%)
Query: 25 PAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAALASAGSRRCAPAALCSSGGCALT 84
P P+ R P AR P AA +PP + A A S A+ S
Sbjct: 12 PLPAARGP---------ARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNPSSSAGEE 62
Query: 85 RRAACGGRGGGTRAG------QGG---RGAWGEAPVGSAALSSP 119
+ A G G+ AG +GG RGA A G+AAL P
Sbjct: 63 KGATGGSSSSGSGAGSCCLGAEGGADPRGAGSAAAAGAAALDEP 106
Score = 33.9 bits (76), Expect = 0.40
Identities = 35/113 (30%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 29 LRAPRGRTHLPGVARC-----PWRLHGAAFAPPASQAALA-----SAGSRRCAPAALCSS 78
L A RG P A P GAA AP A+ A A SAG + A SS
Sbjct: 13 LPAARGPARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNPSSSAGEEKGATGGSSSS 72
Query: 79 GGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSSPTGVSHLLSSQLR 131
G A + G GG G G A G A + A + L +LR
Sbjct: 73 GSGAGS--CCLGAEGGADPRGAGSAAAAGAAALDEPAAAGQKEKDEALEEKLR 123
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 37.7 bits (86), Expect = 0.028
Identities = 44/162 (27%), Positives = 54/162 (33%), Gaps = 40/162 (24%)
Query: 345 GSAPRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCD---------S 395
G AP A P PAL P S+ P + L + P D Q C
Sbjct: 653 GGAPASATPTPALSPGRSLRPHLIPLLLRGAE-----APLTDACQQEMCSKLRGAQGPLG 707
Query: 396 QEQRGPRPPPAHGPLHPGGRPGTAQLRREPGPE------ALRSRPRSPPAAHEALPRHRR 449
+ P PPP L PGG P P P+ AL R+ A + +
Sbjct: 708 PDMESPLPPPPLSLLRPGGAP-------PPPPKNPARLMALALAERAQQVAEQQSQQECG 760
Query: 450 GTARPDQSERPGHLGTALRLNHFLGGSTEEWGGAAQGRQGGG 491
GT P S+ P H +L E GG G G G
Sbjct: 761 GT--PPASQSPFHRSLSL-----------EVGGEPLGTSGSG 789
>gi|7662340 MORC family CW-type zinc finger 2 [Homo sapiens]
Length = 970
Score = 37.7 bits (86), Expect = 0.028
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 348 PRPAAPLPALCPLTSVLPRQLRYLFALEDEALRTQPEPDDLGQHRCDSQEQRGPRPPPAH 407
PRPA+ P P+ S P+ L L A E+ + +P + + ++ + RP P
Sbjct: 573 PRPASQ-PRKAPVISSTPK-LPALAAREEASTSRLLQPPEAPRKPANTLVKTASRPAPLV 630
Query: 408 GPLHPGGRPGTAQLRREPGPEALRS----RPRSPPAAHEALPRHRRGTARPDQSE 458
L P P + R P P+ +++ + SP A P +R A D+ E
Sbjct: 631 QQLSPSLLPNSKSPREVPSPKVIKTPVVKKTESPIKLSPATPSRKRSVAVSDEEE 685
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 37.4 bits (85), Expect = 0.037
Identities = 30/116 (25%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 3 GGGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGVARCPWRLHGAAFAPPASQAAL 62
GGG G G P AE SL + P V A PA A +
Sbjct: 57 GGGRRGGGGGSPSSSTGAEREDDDESLSVSK-----PLVPNAALLGPPAQVGAPAGPAPV 111
Query: 63 ASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPVGSAALSS 118
A + S + + + C++T GG G G G R A G G+ + +S
Sbjct: 112 AFSSSAATSSSTSTPTSSCSMTAADFGGGAAAGAVGGPGSRSAGGAGGTGTGSGAS 167
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 37.4 bits (85), Expect = 0.037
Identities = 55/225 (24%), Positives = 79/225 (35%), Gaps = 22/225 (9%)
Query: 4 GGAEPGTGTGPDGQEAAESRRPAPSLRAPRGRTHLPGV------ARCPWRLHGAAFAPPA 57
G E T + E P+P +R P G T PGV + L+G+ A P
Sbjct: 334 GSRESQTRKKVNHSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPR 393
Query: 58 SQAALASAGSRRCAPAALCSSGGCALTRRAACGGRGGGTRAGQGGRGAWGEAPV-GSAAL 116
R P A + L G QGGR A G+ P G+
Sbjct: 394 DSPRPGKPDERDIWPPAQAPTSSQEL-----AGAPEPQGSCAQGGRVAPGQRPAQGATGT 448
Query: 117 SSPTGVSHLLSSQLRGQGALESCGGILPLAAQRRSMDKASGYVRACPLLSIRRSSFRPGW 176
+S S +G S + +R K L+ + SS PG
Sbjct: 449 DLDFDLSSDSESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALA-QGSSLEPG- 506
Query: 177 SRVLAKEVGGELKPEAPSIGAKSIEEGEEVLGAEDSVGQREGQGG 221
R A + GE +P GA + ++ E+ G E+ G+R+G G
Sbjct: 507 -RPAAPSLPGEAEP-----GAHAPDKEPELGGQEE--GERDGLCG 543
Score = 30.4 bits (67), Expect = 4.5
Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 404 PPAHGPLHPGGRPGTAQLRREPGPEALRSRPRSPPAAHEALPRHRRGTARPDQSE--RPG 461
PP P PG EP L R + A PR +PD+ + P
Sbjct: 357 PPVRDPEGVTQAPGV-----EPS-NGLEKPARELNGSEAATPRDSPRPGKPDERDIWPPA 410
Query: 462 HLGTALRLNHFLGGSTEEWGGAAQGRQGGGAKSPSGRCQGLQARSDLASATLHTDRCGDS 521
T+ + L G+ E G AQG + + P+ G DL+S D S
Sbjct: 411 QAPTS---SQELAGAPEPQGSCAQGGRVAPGQRPAQGATGTDLDFDLSS-----DSESSS 462
Query: 522 ETQNGRARPSSLAGEAD 538
E++ ++ S+ GE++
Sbjct: 463 ESEGTKSSSSASDGESE 479
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,678,520
Number of Sequences: 37866
Number of extensions: 1785976
Number of successful extensions: 11469
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 629
Number of HSP's that attempted gapping in prelim test: 9067
Number of HSP's gapped (non-prelim): 2862
length of query: 558
length of database: 18,247,518
effective HSP length: 107
effective length of query: 451
effective length of database: 14,195,856
effective search space: 6402331056
effective search space used: 6402331056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.