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Search of human proteins with 239754880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754880 PREDICTED: similar to hCG2040198 [Homo sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754880 PREDICTED: similar to hCG2040198 [Homo sapiens] 345 8e-96
gi|239749418 PREDICTED: similar to hCG2040198 [Homo sapiens] 345 8e-96
gi|239743554 PREDICTED: similar to hCG2040198 [Homo sapiens] 345 8e-96
gi|40254949 erythrocyte membrane protein band 4.1 like 5 [Homo s... 170 5e-43
gi|110624794 erythrocyte membrane protein band 4.1 like 4B isofo... 96 1e-20
gi|110624790 erythrocyte membrane protein band 4.1 like 4B isofo... 96 1e-20
gi|207113199 erythrocyte membrane protein band 4.1-like 2 isofor... 60 9e-10
gi|207113195 erythrocyte membrane protein band 4.1-like 2 isofor... 60 9e-10
gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform ... 60 9e-10
gi|94721308 FERM domain containing 5 isoform 2 [Homo sapiens] 52 2e-07
gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo s... 52 2e-07
gi|5031633 FERM, RhoGEF, and pleckstrin domain protein 1 isoform... 50 1e-06
gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform... 47 6e-06
gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform... 47 6e-06
gi|42716291 erythrocyte membrane protein band 4.1 (elliptocytosi... 45 2e-05
gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis... 45 2e-05
gi|117500790 FERM domain containing 3 [Homo sapiens] 43 1e-04
gi|4506295 protein tyrosine phosphatase, non-receptor type 4 [Ho... 41 6e-04
gi|223941879 protein tyrosine phosphatase, non-receptor type 3 i... 39 0.003
gi|223941876 protein tyrosine phosphatase, non-receptor type 3 i... 39 0.003
gi|87042275 erythrocyte protein band 4.1-like 4 [Homo sapiens] 38 0.005
gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo sa... 35 0.024
gi|34328899 protein tyrosine phosphatase, non-receptor type 14 [... 35 0.031
gi|150010540 FERM domain containing 4B [Homo sapiens] 35 0.031
gi|116063562 FERM domain containing 4A [Homo sapiens] 35 0.040
gi|38788243 myosin regulatory light chain interacting protein [H... 34 0.068
gi|33286444 mastermind-like 2 [Homo sapiens] 32 0.26
gi|150418005 protein tyrosine phosphatase, non-receptor type 21 ... 30 1.3
gi|34916000 FERM domain containing 7 [Homo sapiens] 30 1.3
gi|67782358 complement factor B preproprotein [Homo sapiens] 29 1.7
>gi|239754880 PREDICTED: similar to hCG2040198 [Homo sapiens]
Length = 169
Score = 345 bits (886), Expect = 8e-96
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH 60
MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH
Sbjct: 1 MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH 60
Query: 61 RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL 120
RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL
Sbjct: 61 RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL 120
Query: 121 LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK
Sbjct: 121 LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
>gi|239749418 PREDICTED: similar to hCG2040198 [Homo sapiens]
Length = 169
Score = 345 bits (886), Expect = 8e-96
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH 60
MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH
Sbjct: 1 MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH 60
Query: 61 RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL 120
RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL
Sbjct: 61 RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL 120
Query: 121 LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK
Sbjct: 121 LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
>gi|239743554 PREDICTED: similar to hCG2040198 [Homo sapiens]
Length = 169
Score = 345 bits (886), Expect = 8e-96
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH 60
MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH
Sbjct: 1 MLNETMIVHAYYLHTQIHDNDMADSLIMPMSGGFVLNNDEEQEPPPRQPCSALHLSGRYH 60
Query: 61 RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL 120
RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL
Sbjct: 61 RGHAVPSSVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSL 120
Query: 121 LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK
Sbjct: 121 LDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
>gi|40254949 erythrocyte membrane protein band 4.1 like 5 [Homo
sapiens]
Length = 733
Score = 170 bits (431), Expect = 5e-43
Identities = 87/95 (91%), Positives = 89/95 (93%)
Query: 72 MLSFFRRTLGSRSMGKHAEKERLREAQCAATHIPAPGDSRSIITCQVSLLDGTDVSVDLP 131
MLSFFRRTLG RSM KHAEKERLREAQ AATHIPA GDS+SIITC+VSLLDGTDVSVDLP
Sbjct: 1 MLSFFRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDSKSIITCRVSLLDGTDVSVDLP 60
Query: 132 KKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVA 166
KKAKGQELFDQIMYHLDLIES YF LRFMDSAQVA
Sbjct: 61 KKAKGQELFDQIMYHLDLIESDYFGLRFMDSAQVA 95
>gi|110624794 erythrocyte membrane protein band 4.1 like 4B isoform
1 [Homo sapiens]
Length = 518
Score = 96.3 bits (238), Expect = 1e-20
Identities = 45/67 (67%), Positives = 57/67 (85%)
Query: 100 AATHIPAPGDSRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRF 159
AA HI A G +++ + C+V LLDGT+VSVDLPK AKGQ+LFDQI+YHLDL+E+ YF L+F
Sbjct: 71 AAVHISAAGAAKATLYCRVFLLDGTEVSVDLPKHAKGQDLFDQIVYHLDLVETDYFGLQF 130
Query: 160 MDSAQVA 166
+DSAQVA
Sbjct: 131 LDSAQVA 137
>gi|110624790 erythrocyte membrane protein band 4.1 like 4B isoform
2 [Homo sapiens]
Length = 900
Score = 96.3 bits (238), Expect = 1e-20
Identities = 45/67 (67%), Positives = 57/67 (85%)
Query: 100 AATHIPAPGDSRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRF 159
AA HI A G +++ + C+V LLDGT+VSVDLPK AKGQ+LFDQI+YHLDL+E+ YF L+F
Sbjct: 71 AAVHISAAGAAKATLYCRVFLLDGTEVSVDLPKHAKGQDLFDQIVYHLDLVETDYFGLQF 130
Query: 160 MDSAQVA 166
+DSAQVA
Sbjct: 131 LDSAQVA 137
>gi|207113199 erythrocyte membrane protein band 4.1-like 2 isoform b
[Homo sapiens]
Length = 673
Score = 60.1 bits (144), Expect = 9e-10
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 114 ITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQ 164
+ C+V+LLDGT+ S DL K AKGQ LFD++ HL+L+E YF L F +S +
Sbjct: 218 VQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPE 268
>gi|207113195 erythrocyte membrane protein band 4.1-like 2 isoform b
[Homo sapiens]
Length = 673
Score = 60.1 bits (144), Expect = 9e-10
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 114 ITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQ 164
+ C+V+LLDGT+ S DL K AKGQ LFD++ HL+L+E YF L F +S +
Sbjct: 218 VQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPE 268
>gi|4503579 erythrocyte membrane protein band 4.1-like 2 isoform a
[Homo sapiens]
Length = 1005
Score = 60.1 bits (144), Expect = 9e-10
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 114 ITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQ 164
+ C+V+LLDGT+ S DL K AKGQ LFD++ HL+L+E YF L F +S +
Sbjct: 218 VQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPE 268
>gi|94721308 FERM domain containing 5 isoform 2 [Homo sapiens]
Length = 570
Score = 52.4 bits (124), Expect = 2e-07
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 108 GDSRSI---ITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMD 161
G SRS+ +C V LLD ++ + + + AKGQ LFD + +HL+L+E YF +RF+D
Sbjct: 8 GSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFDLLCHHLNLLEKDYFGIRFVD 64
>gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo
sapiens]
Length = 1087
Score = 52.0 bits (123), Expect = 2e-07
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDS 162
C+V LLDG++ + D+ K+++GQ LFD++ HL+L+E YF L + D+
Sbjct: 112 CKVILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDA 158
>gi|5031633 FERM, RhoGEF, and pleckstrin domain protein 1 isoform 1
[Homo sapiens]
Length = 1045
Score = 49.7 bits (117), Expect = 1e-06
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 105 PAPGDSRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQ 164
P P S +++ ++ +LD T + ++P++A G+ L D + HL+L+E YF L F D +
Sbjct: 31 PPPTPSGKLVSIKIQMLDDTQEAFEVPQRAPGKVLLDAVCNHLNLVEGDYFGLEFPDHKK 90
Query: 165 V 165
+
Sbjct: 91 I 91
>gi|30061491 erythrocyte membrane protein band 4.1-like 1 isoform b
[Homo sapiens]
Length = 779
Score = 47.4 bits (111), Expect = 6e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDS 162
C+V+LLD ++ ++ K +GQ LFD + HL+L+E YF L F D+
Sbjct: 37 CRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCDA 83
>gi|30061489 erythrocyte membrane protein band 4.1-like 1 isoform a
[Homo sapiens]
Length = 881
Score = 47.4 bits (111), Expect = 6e-06
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDS 162
C+V+LLD ++ ++ K +GQ LFD + HL+L+E YF L F D+
Sbjct: 99 CRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCDA 145
>gi|42716291 erythrocyte membrane protein band 4.1 (elliptocytosis
1, RH-linked) isoform 2 [Homo sapiens]
Length = 641
Score = 45.4 bits (106), Expect = 2e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSA 163
C+VSLLD T + K AKGQ+L ++ HL+L+E YF L D+A
Sbjct: 3 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNA 50
>gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis 1,
RH-linked) isoform 3 [Homo sapiens]
Length = 588
Score = 45.4 bits (106), Expect = 2e-05
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSA 163
C+VSLLD T + K AKGQ+L ++ HL+L+E YF L D+A
Sbjct: 3 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNA 50
>gi|117500790 FERM domain containing 3 [Homo sapiens]
Length = 597
Score = 42.7 bits (99), Expect = 1e-04
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMD 161
C + LLD +++S + ++ KGQ L D I + L+E YF +R++D
Sbjct: 34 CTIRLLDDSEISCHIQRETKGQFLIDHICNYYSLLEKDYFGIRYVD 79
>gi|4506295 protein tyrosine phosphatase, non-receptor type 4 [Homo
sapiens]
Length = 926
Score = 40.8 bits (94), Expect = 6e-04
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 114 ITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSA 163
+ C + LLD T + + K +GQ L D + HLDL E YF L+ D +
Sbjct: 29 VVCNILLLDNTVQAFKVNKHDQGQVLLDVVFKHLDLTEQDYFGLQLADDS 78
>gi|223941879 protein tyrosine phosphatase, non-receptor type 3
isoform 2 [Homo sapiens]
Length = 868
Score = 38.5 bits (88), Expect = 0.003
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 110 SRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
+RS + C + LDG + + K+ GQ L D + HL + E YF L+ D V SP+
Sbjct: 25 TRSEVICSIHFLDGVVQTFKVTKQDTGQVLLDMVHNHLGVTEKEYFGLQH-DDDSVDSPR 83
>gi|223941876 protein tyrosine phosphatase, non-receptor type 3
isoform 1 [Homo sapiens]
Length = 913
Score = 38.5 bits (88), Expect = 0.003
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 110 SRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVASPK 169
+RS + C + LDG + + K+ GQ L D + HL + E YF L+ D V SP+
Sbjct: 25 TRSEVICSIHFLDGVVQTFKVTKQDTGQVLLDMVHNHLGVTEKEYFGLQH-DDDSVDSPR 83
>gi|87042275 erythrocyte protein band 4.1-like 4 [Homo sapiens]
Length = 686
Score = 37.7 bits (86), Expect = 0.005
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 116 CQVSLLDGTDVSVD-----LPKKAKGQELFDQIMYHLDLIESGYFDLRFMD 161
C+V LLD + +++ + K KG + D + +H++L+E YF LR+ D
Sbjct: 13 CEVLLLDESKLTLTTQQQGIKKSTKGSVVLDHVFHHVNLVEIDYFGLRYCD 63
>gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo
sapiens]
Length = 1054
Score = 35.4 bits (80), Expect = 0.024
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 117 QVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDS 162
+V LLD T D+ K GQ L Q+ L+L+E YF + F ++
Sbjct: 47 RVKLLDNTMEIFDIEPKCDGQVLLTQVWKRLNLVECDYFGMEFQNT 92
>gi|34328899 protein tyrosine phosphatase, non-receptor type 14
[Homo sapiens]
Length = 1187
Score = 35.0 bits (79), Expect = 0.031
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 110 SRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDSAQVA 166
S++ ++ LLD + L ++ GQE + + L+L E+ YF L F+ +Q A
Sbjct: 17 SKNCFVTRIRLLDSNVIECTLSVESTGQECLEAVAQRLELRETHYFGLWFLSKSQQA 73
>gi|150010540 FERM domain containing 4B [Homo sapiens]
Length = 1034
Score = 35.0 bits (79), Expect = 0.031
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMD 161
CQV LLD + + + K +EL D + H +L E YF + F+D
Sbjct: 61 CQVHLLDDRRLELLVQPKLLARELLDLVASHFNLKEKEYFGITFID 106
>gi|116063562 FERM domain containing 4A [Homo sapiens]
Length = 1039
Score = 34.7 bits (78), Expect = 0.040
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMD 161
CQV LLD + + + K +EL D + H +L E YF + F D
Sbjct: 22 CQVHLLDDRKLELLVQPKLLAKELLDLVASHFNLKEKEYFGIAFTD 67
>gi|38788243 myosin regulatory light chain interacting protein [Homo
sapiens]
Length = 445
Score = 33.9 bits (76), Expect = 0.068
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 116 CQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRFMDS 162
C V+ D + V++ KA G++ +Q+ L +IE YF L+F S
Sbjct: 3 CYVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTGS 49
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 32.0 bits (71), Expect = 0.26
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 50 CSALHLS--GRYHRGHAVPS-----SVTKMLSFFRRTLGSRSMGKHAEKERLREAQCAAT 102
C HLS GRY RG A S S ++LS + G+R GKH + A A T
Sbjct: 47 CRQHHLSCEGRYERGRAESSDRERESTLQLLSLVQHGQGARKAGKHTK----ATATAATT 102
Query: 103 HIPAP 107
P P
Sbjct: 103 TAPPP 107
>gi|150418005 protein tyrosine phosphatase, non-receptor type 21
[Homo sapiens]
Length = 1174
Score = 29.6 bits (65), Expect = 1.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 110 SRSIITCQVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDL 157
S+S + ++ LL+ V L ++ GQE + + L+L E YF L
Sbjct: 19 SKSCLVARIQLLNNEFVEFTLSVESTGQESLEAVAQRLELREVTYFSL 66
>gi|34916000 FERM domain containing 7 [Homo sapiens]
Length = 714
Score = 29.6 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 117 QVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESGYFDLRF 159
+V LD + + +K+ G+ LF+ HL+L E YF L F
Sbjct: 5 KVQFLDDSQKIFVVDQKSSGKALFNLSCSHLNLAEKEYFGLEF 47
>gi|67782358 complement factor B preproprotein [Homo sapiens]
Length = 764
Score = 29.3 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 78 RTLGSRSMGKHAEKERLREAQCAATHIPAPGD 109
R+ GS S K +++ +R+A+C A H P P D
Sbjct: 77 RSTGSWSTLKTQDQKTVRKAECRAIHCPRPHD 108
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,076,246
Number of Sequences: 37866
Number of extensions: 321780
Number of successful extensions: 914
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 43
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.