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Search of human proteins with 239754220
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754220 PREDICTED: hypothetical protein XP_002345913 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754220 PREDICTED: hypothetical protein XP_002345913 [Homo ... 247 1e-66
gi|239748730 PREDICTED: hypothetical protein XP_002346792 [Homo ... 247 1e-66
gi|239742776 PREDICTED: hypothetical protein XP_002342671 [Homo ... 243 2e-65
gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens] 35 0.017
gi|239754544 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|239749109 PREDICTED: hypothetical protein XP_002346915 [Homo ... 33 0.048
gi|239743138 PREDICTED: hypothetical protein XP_002342745 [Homo ... 33 0.048
gi|239508796 PREDICTED: hypothetical protein [Homo sapiens] 33 0.048
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 33 0.048
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 32 0.14
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 31 0.18
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 31 0.18
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti... 31 0.24
gi|120587019 zinc finger protein 318 [Homo sapiens] 30 0.31
gi|118130809 endothelial cell-specific chemotaxis regulator [Hom... 30 0.41
gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens] 30 0.53
gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens] 30 0.53
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 30 0.53
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 30 0.53
gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo ... 29 0.70
gi|239752186 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo ... 29 0.70
gi|188536004 zinc finger protein 469 [Homo sapiens] 29 0.70
gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens] 29 0.70
gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens] 29 0.70
gi|219273466 hypothetical protein LOC29125 [Homo sapiens] 29 0.70
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 29 0.70
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo... 29 0.70
gi|13375727 acyl-CoA synthetase short-chain family member 3 [Hom... 29 0.91
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 29 0.91
>gi|239754220 PREDICTED: hypothetical protein XP_002345913 [Homo
sapiens]
Length = 117
Score = 247 bits (631), Expect = 1e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL
Sbjct: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
Query: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL
Sbjct: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
>gi|239748730 PREDICTED: hypothetical protein XP_002346792 [Homo
sapiens]
Length = 117
Score = 247 bits (631), Expect = 1e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL
Sbjct: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
Query: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL
Sbjct: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
>gi|239742776 PREDICTED: hypothetical protein XP_002342671 [Homo
sapiens]
Length = 117
Score = 243 bits (621), Expect = 2e-65
Identities = 115/117 (98%), Positives = 115/117 (98%)
Query: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL
Sbjct: 1 MQEMAGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
Query: 61 SEGAAVPHSGRDAAWCRDAHLQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPSSARL 117
SEGAAVPHSGRDAAWCRDAH QWHFPSYTMSFIHVLHNPLPATGSVSHLEQP SARL
Sbjct: 61 SEGAAVPHSGRDAAWCRDAHFQWHFPSYTMSFIHVLHNPLPATGSVSHLEQPYSARL 117
>gi|63175652 CREBBP/EP300 inhibitor 2 [Homo sapiens]
Length = 236
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 22 DEGWEGTQAQGEGGPSP----GRTARSQAGP--ASRISPAGLQVLSEGAAVPHSGRDAAW 75
+E EG A GGP P GR A ++A P A+R +P L+ AA AA
Sbjct: 40 EEAGEGAMAAARGGPVPAAREGRMAAARAAPAAAARGAPVAAAALARAAAAGRESPAAAA 99
Query: 76 CRDAHL 81
R+A +
Sbjct: 100 AREARM 105
>gi|239754544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 26 EGTQAQGEGGP--SPGRTARSQAGPASRI--SPAGLQV-LSEGAAVPHSG--RDAAWCRD 78
EG+ GGP SPG P R P G QV L G AVP R AAWCR
Sbjct: 100 EGSWVPMPGGPQLSPGGGVGQMPSPLRRQFPEPPGRQVVLRAGPAVPRGSMRRAAAWCRG 159
Query: 79 AHL 81
A L
Sbjct: 160 ARL 162
>gi|239749109 PREDICTED: hypothetical protein XP_002346915 [Homo
sapiens]
Length = 201
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 26 EGTQAQGEGGP--SPGRTARSQAGPASRI--SPAGLQV-LSEGAAVPHSG--RDAAWCRD 78
EG+ GGP SPG P R P G QV L G AVP R AAWCR
Sbjct: 100 EGSWVPMPGGPQLSPGGGVGQMPSPLRRQFPEPPGRQVVLRAGPAVPRGSMRRAAAWCRG 159
Query: 79 AHL 81
A L
Sbjct: 160 ARL 162
>gi|239743138 PREDICTED: hypothetical protein XP_002342745 [Homo
sapiens]
Length = 201
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 26 EGTQAQGEGGP--SPGRTARSQAGPASRI--SPAGLQV-LSEGAAVPHSG--RDAAWCRD 78
EG+ GGP SPG P R P G QV L G AVP R AAWCR
Sbjct: 100 EGSWVPMPGGPQLSPGGGVGQMPSPLRRQFPEPPGRQVVLRAGPAVPRGSMRRAAAWCRG 159
Query: 79 AHL 81
A L
Sbjct: 160 ARL 162
>gi|239508796 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 33.1 bits (74), Expect = 0.048
Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 26 EGTQAQGEGGP--SPGRTARSQAGPASRI--SPAGLQV-LSEGAAVPHSG--RDAAWCRD 78
EG+ GGP SPG P R P G QV L G AVP R AAWCR
Sbjct: 100 EGSWVPMPGGPQLSPGGGVGQMPSPLRRQFPEPPGRQVVLRAGPAVPRGSMRRAAAWCRG 159
Query: 79 AHL 81
A L
Sbjct: 160 ARL 162
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 33.1 bits (74), Expect = 0.048
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 5 AGDPSEAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGA 64
AG +E P+ E G + G GGP G A ++ + + EGA
Sbjct: 34 AGGEAEGPEGSEGAEEAPRGAAAVKEAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEGA 93
Query: 65 AVPHSGRDAA 74
VP G + +
Sbjct: 94 EVPQGGEETS 103
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 6 GDPSEAPQAGSWVESRDEGWEGTQAQGEGGPS--PGRTARSQA-GPASRISPAGLQ 58
G P + +G EG +G A+GE GP PGRT A GP R+ P GL+
Sbjct: 1307 GPPGKRGPSGHMGREGREGEKG--AKGEPGPDGPPGRTGPMGARGPPGRVGPEGLR 1360
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 6 GDPSEAPQAGSWVESR-----DEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVL 60
G P A + G R D W T + G GG P + + A PA +SPA + L
Sbjct: 53 GSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGGAEPPALSPAPASPARPVSPAPGRRL 112
Query: 61 SEGAAVP 67
S A P
Sbjct: 113 SLWAVPP 119
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 31.2 bits (69), Expect = 0.18
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQV-LSEGAAVPH 68
EAP+A + EG E +A+GE P +A ++ P G++ +EG A P
Sbjct: 2181 EAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPE 2240
Query: 69 S 69
S
Sbjct: 2241 S 2241
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 2 QEMAGDPSEAPQA-GSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQV 59
Q + GDP + P+ G+ + S D G + + +G G + A R +PAG +V
Sbjct: 1012 QSLEGDPGQDPEPEGALLGSSDTGPQSGEGVPQGAAPEGVSEAPAEAGADREAPAGCRV 1070
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQV-LSEGAAVPH 68
EAP+A + EG E A+GE P +A ++ G++ +EG A P
Sbjct: 2133 EAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQPE 2192
Query: 69 S 69
S
Sbjct: 2193 S 2193
Score = 25.8 bits (55), Expect = 7.7
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 16/80 (20%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRT-----------ARSQAGPASR--ISPAG 56
EAP+A + EG E +A+G+ + G A +A P S +P
Sbjct: 1836 EAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEA 1895
Query: 57 ---LQVLSEGAAVPHSGRDA 73
+Q SEGA P + ++A
Sbjct: 1896 EWEVQPESEGAEAPEAEKEA 1915
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
+A +A + EG E +A+GE + G A G A S +EG A P S
Sbjct: 2086 DAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPES 2145
>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
[Homo sapiens]
Length = 327
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 12 PQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHSGR 71
PQA W + + E Q +G PSP A Q GPA + P G VL+ PH+ +
Sbjct: 159 PQAPRWPPNPGKSQEDRDWQRDGLPSP--CAVGQPGPA-QAGPNGQSVLA-----PHASQ 210
Query: 72 DAAW 75
+ W
Sbjct: 211 GSQW 214
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 38 PGRTARSQAGPASRISPAGLQVLSEGAAVPHSGR-------DAAWCRDAHLQWHFPSYTM 90
PG AR Q + + + + V + H G+ DA WC AH H +
Sbjct: 24 PGIAARVQLARETGLPESRIHVWFQNHTARHPGQAGRAPAQDAGWCNAAHGGCHPAPSCI 83
Query: 91 SFIH 94
+F H
Sbjct: 84 AFAH 87
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 32 GEGGPSPGRTARSQAGPASRISP 54
G GGP GR++ S +GPA R SP
Sbjct: 19 GGGGPRSGRSSGSSSGPARRSSP 41
>gi|118130809 endothelial cell-specific chemotaxis regulator [Homo
sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 37 SPGRTARSQAGPASRISPAGLQVLSEGAAVPHSGRDAAWCRDAHLQWHFPSYTMS 91
+PG S+A S +S G + GA VP SGRD RD S TMS
Sbjct: 51 NPGYIPSSEANRPSHLSSTG----TPGAGVPSSGRDGGTSRDTFQTVPPNSTTMS 101
>gi|169216507 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 1 MQEMAGDPSEAPQAGSW----VESRDEGW-EGTQAQGEGGPS-PGRTARSQAGPASRISP 54
M+ A P+ + Q +W VES D + + AQG + PG ++A A++ +
Sbjct: 277 MEAWAAFPARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDAAEAASATKEAA 336
Query: 55 AGLQVLSEGAAVPHSGRDAAWCRDAHLQW 83
G EG + P R + W
Sbjct: 337 RGAPAAGEGESAPAGPEGLGQARPIEVPW 365
>gi|169216732 PREDICTED: similar to hCG1645335 [Homo sapiens]
Length = 409
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 1 MQEMAGDPSEAPQAGSW----VESRDEGW-EGTQAQGEGGPS-PGRTARSQAGPASRISP 54
M+ A P+ + Q +W VES D + + AQG + PG ++A A++ +
Sbjct: 277 MEAWAAFPARSQQGVAWAAAPVESEDPAAAQASPAQGNASEAGPGAEDAAEAASATKEAA 336
Query: 55 AGLQVLSEGAAVPHSGRDAAWCRDAHLQW 83
G EG + P R + W
Sbjct: 337 RGAPAAGEGESAPAGPEGLGQARPIEVPW 365
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 2 QEMAGDPSEAPQAGSW-------------VESRD-EGWEGTQAQGEGGPSPGRTARSQAG 47
Q+ DP+ AP G++ SRD E W+ + G+ SP R+ +
Sbjct: 214 QKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSV 273
Query: 48 PASRISPAGLQ 58
ASR +P +Q
Sbjct: 274 QASRPAPGSVQ 284
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 2 QEMAGDPSEAPQAGSW-------------VESRD-EGWEGTQAQGEGGPSPGRTARSQAG 47
Q+ DP+ AP G++ SRD E W+ + G+ SP R+ +
Sbjct: 210 QKTGPDPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSV 269
Query: 48 PASRISPAGLQ 58
ASR +P +Q
Sbjct: 270 QASRPAPGSVQ 280
>gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo
sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
E P AG W +R E P GRTA SQ GP +P LQ + A P +
Sbjct: 34 EHPPAGGWARAR-----------EVSPGSGRTACSQCGP----TPPALQA-AGCPAPPGT 77
Query: 70 GR 71
GR
Sbjct: 78 GR 79
>gi|239752186 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
E P AG W +R E P GRTA SQ GP +P LQ + A P +
Sbjct: 34 EHPPAGGWARAR-----------EVSPGSGRTACSQCGP----TPPALQA-AGCPAPPGT 77
Query: 70 GR 71
GR
Sbjct: 78 GR 79
>gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo
sapiens]
Length = 180
Score = 29.3 bits (64), Expect = 0.70
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 16/62 (25%)
Query: 10 EAPQAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVPHS 69
E P AG W +R E P GRTA SQ GP +P LQ + A P +
Sbjct: 34 EHPPAGGWARAR-----------EVSPGSGRTACSQCGP----TPPALQA-AGCPAPPGT 77
Query: 70 GR 71
GR
Sbjct: 78 GR 79
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 27 GTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
G +QG G P PG ++ G S+ PA Q+ SE A P
Sbjct: 3701 GPSSQGSGSPRPG----TKTGGGSQPQPASGQLQSETATTP 3737
>gi|116875842 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 3 EMAGDPSEAPQAGSWVESRDEGWEGTQAQGE---GGPSPGRTARSQAGPASRISP 54
E A S + +AGS ++++ QA GE GPS SQAGP++ ++P
Sbjct: 128 EQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSS-----SQAGPSNGVAP 177
>gi|116875840 tRNA-intron endonuclease 34 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 3 EMAGDPSEAPQAGSWVESRDEGWEGTQAQGE---GGPSPGRTARSQAGPASRISP 54
E A S + +AGS ++++ QA GE GPS SQAGP++ ++P
Sbjct: 128 EQASGASSSQEAGSSQAAKEDETSDGQASGEQEEAGPSS-----SQAGPSNGVAP 177
>gi|219273466 hypothetical protein LOC29125 [Homo sapiens]
Length = 178
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 16 SWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
S VE D W GT PG +R Q P S + PA Q + GA VP
Sbjct: 76 SGVEPPDR-WTGT---------PGWPSRDQEAPGSMMPPAAAQPSAHGALVP 117
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 22 DEGWEGTQAQGEGGPSPGRTARSQAGPAS--RISPAGLQVLSEGAAVPHS 69
D G+ G+ + G GPS R + P S SP+ +V+ AAVP S
Sbjct: 137 DSGFSGSSSYGRLGPSEPRGIYASERPKSLGDASPSAPEVVGARAAVPRS 186
>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
sapiens]
Length = 227
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 13 QAGSWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASRISPAG 56
Q GS E + E G +A+GEG P R S+ P S AG
Sbjct: 85 QGGSKTEGKPE--RGGRAEGEGEPDSEREPESEGEPESETRAAG 126
>gi|13375727 acyl-CoA synthetase short-chain family member 3 [Homo
sapiens]
Length = 686
Score = 28.9 bits (63), Expect = 0.91
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)
Query: 16 SWVESRDEGWEGTQAQGEGGPSPGRTARSQAGPASR----------ISPAGLQVLSEGAA 65
SW++ R + T A G GGP PG + AG A R + G + LS G+
Sbjct: 4 SWLQCR----KVTSAGGLGGPLPGSSPARGAGAALRALVVPGPRGGLGGRGCRALSSGSG 59
Query: 66 VPHSGRDAAWCRDAHLQW 83
+ AA D W
Sbjct: 60 SEYKTHFAASVTDPERFW 77
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 28.9 bits (63), Expect = 0.91
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 19 ESRDEGWEGTQAQGEG--GPSPGRTARSQAGPASRISPAGLQVLSEGAAVP 67
+S + G E +A+G GP PG R A A+R AG + SE A VP
Sbjct: 136 DSPETGEEMGRAEGAWPRGPGPGAVQREAAELAARGPAAGTEEASELAEVP 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.127 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,879,806
Number of Sequences: 37866
Number of extensions: 302111
Number of successful extensions: 1350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 224
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.