Guide to the Human Genome
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Name: LOC100291258 Sequence: fasta or formatted (201aa) NCBI GI: 239749109
Description:

PREDICTED: hypothetical protein XP_002346915

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         16           3
 C cysteine            1.5          3           2
 D aspartate           2.5          5           1
 E glutamate           2.5          5           1
 F phenylalanine       6.5         13           2
 G glycine            11.4         23           3
 H histidine           0.5          1           1
 I isoleucine          1.5          3           1
 K lysine              2.5          5           1
 L leucine             7.0         14           1
 M methionine          4.5          9           1
 N asparagine          2.0          4           2
 P proline            12.4         25           2
 Q glutamine           4.5          9           1
 R arginine            9.0         18           2
 S serine             10.0         20           2
 T threonine           3.0          6           1
 V valine              7.0         14           2
 W tryptophan          3.0          6           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346915 
LOC100292406          1.000   PREDICTED: hypothetical protein 
LOC100288357          1.000   PREDICTED: hypothetical protein XP_002342745 
LOC100288357          1.000   PREDICTED: hypothetical protein 
LOC284988             0.035   PREDICTED: hypothetical protein 
ARID1B                0.030   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.030   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.030   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC643355             0.023   PREDICTED: hypothetical protein 
LOC100288426          0.023   PREDICTED: hypothetical protein XP_002343430 
LOC100291696          0.020   PREDICTED: hypothetical protein XP_002345913 
LOC100291078          0.020   PREDICTED: hypothetical protein XP_002346792 
LOC100293513          0.020   PREDICTED: hypothetical protein 
LOC100294343          0.020   PREDICTED: hypothetical protein XP_002344111 
DIDO1                 0.018   death inducer-obliterator 1 isoform c 
THSD1                 0.018   thrombospondin type I domain-containing 1 isoform 2 ...
THSD1                 0.018   thrombospondin type I domain-containing 1 isoform 1 [...
LZTS2                 0.018   leucine zipper, putative tumor suppressor 2 
DIAPH1                0.018   diaphanous 1 isoform 2 
DIAPH1                0.018   diaphanous 1 isoform 1 
LOC100289737          0.018   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.018   PREDICTED: hypothetical protein XP_002343039 
FCHO1                 0.015   FCH domain only 1 isoform c 
FCHO1                 0.015   FCH domain only 1 isoform b 
FCHO1                 0.015   FCH domain only 1 isoform b 
FCHO1                 0.015   FCH domain only 1 isoform a 
LOC100291129          0.015   PREDICTED: hypothetical protein XP_002347815 
SYN1                  0.015   synapsin I isoform Ia 
SYN1                  0.015   synapsin I isoform Ib 
LOC100293814          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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