Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239754074

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754074 PREDICTED: hypothetical protein XP_002345859 [Homo
sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754074 PREDICTED: hypothetical protein XP_002345859 [Homo ...   213   3e-56
gi|239748601 PREDICTED: hypothetical protein XP_002346737 [Homo ...   213   3e-56
gi|239742618 PREDICTED: hypothetical protein XP_002342573 [Homo ...   213   3e-56
gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo ...    43   6e-05
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             40   3e-04
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             40   3e-04
gi|28274705 family with sequence similarity 9, member A [Homo sa...    40   4e-04
gi|5032007 purine-rich element binding protein A [Homo sapiens]        38   0.002
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom...    37   0.003
gi|28269693 xylosyltransferase I [Homo sapiens]                        37   0.004
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs...    36   0.007
gi|55741655 anoctamin 8 [Homo sapiens]                                 35   0.010
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]     35   0.010
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]     35   0.010
gi|4758392 forkhead box D1 [Homo sapiens]                              35   0.010
gi|160707881 formin 2 [Homo sapiens]                                   35   0.013
gi|158534055 round spermatid basic protein 1-like [Homo sapiens]       35   0.013
gi|62945417 dystrophia myotonica-containing WD repeat motif prot...    35   0.013
gi|21322252 androgen receptor isoform 1 [Homo sapiens]                 35   0.017
gi|4507955 YY1 transcription factor [Homo sapiens]                     35   0.017
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]     35   0.017
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H...    35   0.017
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ...    34   0.022
gi|51944974 tumor suppressor candidate 1 [Homo sapiens]                34   0.022
gi|224465235 euchromatic histone-lysine N-methyltransferase 1 is...    34   0.022
gi|224465233 euchromatic histone-lysine N-methyltransferase 1 is...    34   0.022
gi|89257348 homeo box HB9 [Homo sapiens]                               34   0.022
gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]            34   0.028
gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo ...    34   0.028

>gi|239754074 PREDICTED: hypothetical protein XP_002345859 [Homo
           sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
           MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK
Sbjct: 1   MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60

Query: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
           VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD
Sbjct: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103


>gi|239748601 PREDICTED: hypothetical protein XP_002346737 [Homo
           sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
           MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK
Sbjct: 1   MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60

Query: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
           VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD
Sbjct: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103


>gi|239742618 PREDICTED: hypothetical protein XP_002342573 [Homo
           sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60
           MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK
Sbjct: 1   MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLK 60

Query: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
           VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD
Sbjct: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103


>gi|39777586 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 [Homo
          sapiens]
          Length = 1386

 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 1  MCACVRAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGG 49
          M + VR R+G   +GGG G     R GRS   +    GGG  GGGGGGG
Sbjct: 1  MSSSVR-RKGKPGKGGGKGSSRGGRGGRSHASKSHGSGGGGGGGGGGGG 48


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 23/100 (23%)

Query: 16  GGAGPRIRARRGRSEEEEEEEE-----------------GGGREGGGGGGGESGSQRPVG 58
           G  G   R R    EEEEEEEE                 G G  GGGGGGG  G     G
Sbjct: 23  GSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGG-----G 77

Query: 59  LKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGG 98
              T       S  +  EDE E+E+  +  +     +GGG
Sbjct: 78  EAETMSEPSPESASQAGEDEDEEEDDEEE-EDESSSSGGG 116



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 18/109 (16%)

Query: 10  GSAREGGGAG-----------PRIRARRGRSEEEEEEEEGGGREGGGGGGG--ESGSQRP 56
           G    GGG G           P   ++ G  E+EEE++E    E    GGG  ES ++  
Sbjct: 66  GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESL 125

Query: 57  VGLKVTRLVQKTAS-----RKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
           VG        +T S         + D   KE   +    R  + GGGGG
Sbjct: 126 VGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGG 174



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 27  GRSEEEEEEEEGG-GREGGGGGGGESGS 53
           G  +E  EE +G  G +GGGGGG  S S
Sbjct: 152 GDGKEGLEEPKGPRGSQGGGGGGSSSSS 179


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 23/100 (23%)

Query: 16  GGAGPRIRARRGRSEEEEEEEE-----------------GGGREGGGGGGGESGSQRPVG 58
           G  G   R R    EEEEEEEE                 G G  GGGGGGG  G     G
Sbjct: 23  GSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGG-----G 77

Query: 59  LKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGG 98
              T       S  +  EDE E+E+  +  +     +GGG
Sbjct: 78  EAETMSEPSPESASQAGEDEDEEEDDEEE-EDESSSSGGG 116



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 18/109 (16%)

Query: 10  GSAREGGGAG-----------PRIRARRGRSEEEEEEEEGGGREGGGGGGG--ESGSQRP 56
           G    GGG G           P   ++ G  E+EEE++E    E    GGG  ES ++  
Sbjct: 66  GGGGGGGGVGGGEAETMSEPSPESASQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESL 125

Query: 57  VGLKVTRLVQKTAS-----RKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
           VG        +T S         + D   KE   +    R  + GGGGG
Sbjct: 126 VGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGG 174



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 27  GRSEEEEEEEEGG-GREGGGGGGGESGS 53
           G  +E  EE +G  G +GGGGGG  S S
Sbjct: 152 GDGKEGLEEPKGPRGSQGGGGGGSSSSS 179


>gi|28274705 family with sequence similarity 9, member A [Homo
           sapiens]
          Length = 332

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 13/53 (24%)

Query: 30  EEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKE 82
           EEEE EEEGGG EG  GGGG  G             ++T   +E  E+E E+E
Sbjct: 236 EEEEGEEEGGGEEGEEGGGGGEG-------------EETEEEEEEEEEEEEEE 275



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)

Query: 9   EGSAREGGGAGPRIRARRGRSEEEEEEEE 37
           EG    GGG G          EEEEEEE+
Sbjct: 248 EGEEGGGGGEGEETEEEEEEEEEEEEEEQ 276



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 28  RSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSSQR 87
           + ++E EE E            E+ +     + V    ++   ++E  E E E+E   + 
Sbjct: 186 QKDDEAEEAEAAAAAAEAAAAAEAAAAAAEVIVVED--EEEEEKEEEEEKEEEEEEGEEE 243

Query: 88  LKHRVKKTGGGGGGGD 103
                 + GGGGG G+
Sbjct: 244 GGGEEGEEGGGGGEGE 259


>gi|5032007 purine-rich element binding protein A [Homo sapiens]
          Length = 322

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 7   AREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQ 66
           A   S  E GGA        G          GGG  GGGGG G  G   P GL+     Q
Sbjct: 2   ADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQ--HETQ 59

Query: 67  KTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
           + AS++   +++    +  Q  K R  K    G GG+
Sbjct: 60  ELASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGN 96


>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
           sapiens]
          Length = 1152

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 9   EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
           EG   EG G G       G  E EEEE EG G E G  G GE   +   G       +  
Sbjct: 894 EGEEEEGEGEG----EEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEG-----EDG 944

Query: 69  ASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGG 101
               E  E EWE E      +   +  G G  G
Sbjct: 945 EGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEG 977



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 19/43 (44%), Positives = 21/43 (48%)

Query: 10  GSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESG 52
           G  +E GG         G+ E EEEEEEG G E  G G  E G
Sbjct: 805 GEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEG 847



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 9    EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
            EG   EG G G       G  EEEE EEE G  EG G   GE   +     +V   V+  
Sbjct: 971  EGEGEEGEGEGEEEEGE-GEGEEEEGEEE-GEEEGEGEEEGEGEGEEEEEGEVEGEVEGE 1028

Query: 69   ASRKEVTEDEWEKENSSQ 86
                E  E+E E+E   +
Sbjct: 1029 EGEGEGEEEEGEEEGEER 1046



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 6/101 (5%)

Query: 6   RAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLV 65
           + R     EGG              EEEEE+EG G+E G G   E   ++  G    R  
Sbjct: 721 KERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEG---ERKK 777

Query: 66  QKTASRKEVTE---DEWEKENSSQRLKHRVKKTGGGGGGGD 103
           ++ A ++E  E   D+ E E      +   K+ GG   GG+
Sbjct: 778 EERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGE 818



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 20/42 (47%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 9   EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGE 50
           EG   EG G G       G  E EEEE EG G E G G G E
Sbjct: 877 EGEEEEGEGEGEE----EGEGEGEEEEGEGEGEEEGEGEGEE 914



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 9   EGSAREGG----GAGPRIRARR-GRSEEEE---EEEEGGGREGGGGGGGESGSQRPVGLK 60
           EG   EGG    G G R      G  EEEE   EEEEG G E  G G GE   +   G +
Sbjct: 810 EGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEE 869

Query: 61  VTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
                +      E  E+E E E   +      ++ G G G
Sbjct: 870 -----EGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEG 904



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 9    EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGG--GESGSQRPVGLKVTRLVQ 66
            EG   +G G G       G  E EEEE EG G E G G G  GE   +   G        
Sbjct: 938  EGEGEDGEGEG---EEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEG-------- 986

Query: 67   KTASRKEVTEDEWEKENSSQ 86
            +    +E  E+E E+E   +
Sbjct: 987  EGEGEEEEGEEEGEEEGEGE 1006



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 8   REGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQK 67
           RE    EG G            E EEEE EG G E G  G GE   +   G         
Sbjct: 826 REEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEG--------- 876

Query: 68  TASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGGD 103
               +E  E E E+E   +  +   +  G   G G+
Sbjct: 877 -EGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGE 911



 Score = 32.3 bits (72), Expect = 0.082
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)

Query: 26  RGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSS 85
           +G  +E  +E E GG E  G G  E G +     K      K     E  E E EKE   
Sbjct: 717 QGHQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGE--GKEEGEGEEVEGEREKEEGE 774

Query: 86  QRLKHRVKKTGGGGGGGD 103
           ++ + R  K   G   GD
Sbjct: 775 RKKEERAGKEEKGEEEGD 792



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 9    EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
            EG   EG G G       G  E EE E EG   EG G G  E G +           ++ 
Sbjct: 956  EGEEEEGEGEG----EEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEG---------EEE 1002

Query: 69   ASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGG 101
               +E  E E E+E   + ++  V+   G G G
Sbjct: 1003 GEGEEEGEGEGEEEEEGE-VEGEVEGEEGEGEG 1034



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 9   EGSAREGGGAGPRIRARRGRSEEE------EEEEEGGGREGGGGGGGESGSQRPVG 58
           EG   E  G G       G  EEE      EEE EG G E  G G GE   +   G
Sbjct: 875 EGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEG 930



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 21/73 (28%), Positives = 29/73 (39%)

Query: 14   EGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKE 73
            EG G G          E E EE EG G E  G   GE   +   G +  R  ++    + 
Sbjct: 1008 EGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNREEEEEEEG 1067

Query: 74   VTEDEWEKENSSQ 86
              ++  E+EN  Q
Sbjct: 1068 KYQETGEEENERQ 1080



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 9    EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKT 68
            EG   E G     +    G  E EEEE E  G E    G GE   +           ++ 
Sbjct: 1012 EGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNR-----EEEEEEE 1066

Query: 69   ASRKEVTEDEWEKENSSQRLK 89
               +E  E+E E+++  +  K
Sbjct: 1067 GKYQETGEEENERQDGEEYKK 1087


>gi|28269693 xylosyltransferase I [Homo sapiens]
          Length = 959

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 19/49 (38%), Positives = 21/49 (42%)

Query: 8  REGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRP 56
          R G A  GGG  P       R   +   E    R GGGGGGG  G + P
Sbjct: 45 RRGGAAVGGGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRGP 93


>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
           [Homo sapiens]
          Length = 864

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 15/95 (15%)

Query: 15  GGGAGPRIRAR-RGRSE------EEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQK 67
           GGG    +R R RGR++      E   E  G G  GG  GGG   + R    +  R +Q+
Sbjct: 233 GGGGRAYLRPRDRGRTQASPEKLENRSEAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQE 292

Query: 68  TASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGG 102
            A   +   + W     +          GG GGGG
Sbjct: 293 GAEGGQGCSEAWATLGWA--------AAGGFGGGG 319



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 28  RSEEEEEEEEG-----GGREGGGGGGGESGSQ-----RPVGLKVTRLVQKTASRKEV-TE 76
           R+ EE    +G     G R   GGGGG  G+      R   L+   +      R  +   
Sbjct: 184 RAVEEHAAMDGSEGVPGSRRWAGGGGGGGGATYVFRVRAGELEPLLVAAGGGGRAYLRPR 243

Query: 77  DEWEKENSSQRLKHRVKKTGGGGGGG 102
           D    + S ++L++R +  G GG GG
Sbjct: 244 DRGRTQASPEKLENRSEAPGSGGRGG 269


>gi|55741655 anoctamin 8 [Homo sapiens]
          Length = 1232

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 17/96 (17%)

Query: 6   RAREGSAREGGGAGPRIRARR----GRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKV 61
           R  E  A EGGG G     RR    G    EEEEE         G GGE G   P G   
Sbjct: 524 RRLEPQADEGGGGGSGGGGRRCLSGGCGAPEEEEEAALVERRRAGEGGEEGDGPPGG--- 580

Query: 62  TRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGG 97
                     KE  ED+ E+E+  +       + GG
Sbjct: 581 ----------KEEDEDDEEEEDEEEEEDEEEGEEGG 606



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 6   RAREGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRL 64
           R R G   E G   P      G+ E+E++EEE    E      GE G     GL++ ++
Sbjct: 564 RRRAGEGGEEGDGPPG-----GKEEDEDDEEEEDEEEEEDEEEGEEGGLLDCGLRLKKV 617


>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
          Length = 920

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 29  SEEEEEEEEGGGREGGGGGG----------GESGSQRPVGLKVTRLVQKTASRKEVTEDE 78
           S E     +GGG  GGGGGG             G+      K       TA+   V  D 
Sbjct: 674 SSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDP 733

Query: 79  WEKE-NSSQRLKHRVKKTGGGGGGG 102
                ++S R KH     GGGGGGG
Sbjct: 734 LSPPLSASPRDKHPGNGGGGGGGGG 758



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 29  SEEEEEEEEGGGREGGGGGGGESG 52
           S    ++  G G  GGGGGGG  G
Sbjct: 739 SASPRDKHPGNGGGGGGGGGGAGG 762



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 29  SEEEEEEEEGGGREGGGGGGGESG 52
           S  ++    GGG  GGGGG G  G
Sbjct: 741 SPRDKHPGNGGGGGGGGGGAGGGG 764



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 38  GGGREGGGGGGGESGS 53
           GGG  GG GGGG S S
Sbjct: 753 GGGGGGGAGGGGPSAS 768


>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
          Length = 901

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 29  SEEEEEEEEGGGREGGGGGG----------GESGSQRPVGLKVTRLVQKTASRKEVTEDE 78
           S E     +GGG  GGGGGG             G+      K       TA+   V  D 
Sbjct: 655 SSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDP 714

Query: 79  WEKE-NSSQRLKHRVKKTGGGGGGG 102
                ++S R KH     GGGGGGG
Sbjct: 715 LSPPLSASPRDKHPGNGGGGGGGGG 739



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 29  SEEEEEEEEGGGREGGGGGGGESG 52
           S    ++  G G  GGGGGGG  G
Sbjct: 720 SASPRDKHPGNGGGGGGGGGGAGG 743



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 29  SEEEEEEEEGGGREGGGGGGGESG 52
           S  ++    GGG  GGGGG G  G
Sbjct: 722 SPRDKHPGNGGGGGGGGGGAGGGG 745



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/16 (68%), Positives = 11/16 (68%)

Query: 38  GGGREGGGGGGGESGS 53
           GGG  GG GGGG S S
Sbjct: 734 GGGGGGGAGGGGPSAS 749


>gi|4758392 forkhead box D1 [Homo sapiens]
          Length = 465

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 40/80 (50%)

Query: 14  EGGGAGPRI-----RARRGRS----------EEEEEEEE--------------------- 37
           EGGG GPR+     R RR RS          EEEE++++                     
Sbjct: 38  EGGGGGPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDILLAPPAGGSPAPPGPAPAAG 97

Query: 38  ----GGGREGGGGGGGESGS 53
               GGG  GG GGGG +GS
Sbjct: 98  AGAGGGGGGGGAGGGGSAGS 117



 Score = 32.3 bits (72), Expect = 0.082
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 19/90 (21%)

Query: 27  GRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSSQ 86
           G  E+EE+EEE    EGGGG     G +  V  +  R  +  A   E+ + E E+++   
Sbjct: 23  GEGEDEEDEEEEDDDEGGGG-----GPRLAVPAQRRRRRRSYAGEDELEDLEEEEDDDDI 77

Query: 87  RLKHRV--------------KKTGGGGGGG 102
            L                     GGGGGGG
Sbjct: 78  LLAPPAGGSPAPPGPAPAAGAGAGGGGGGG 107


>gi|160707881 formin 2 [Homo sapiens]
          Length = 1722

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 24/101 (23%)

Query: 6   RAREGSAREGGGA-----GPR-IRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGL 59
           R+   +  EGGG      GPR + A +  S  ++   + G   GGGGGGGESG ++    
Sbjct: 10  RSAGDALHEGGGGAEDALGPRDVEATKKGSGGKKALGKHGKGGGGGGGGGESGKKK---- 65

Query: 60  KVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGG 100
                  K+ SR  V         S+ R++  + K  G GG
Sbjct: 66  ------SKSDSRASVF--------SNLRIRKNLSKGKGAGG 92


>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
          Length = 846

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 18  AGPRIRARRGRSEEEEEEEE---GGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEV 74
           A    ++RR + + E+E      GG RE GG    E+G  +P  L   ++  K   R   
Sbjct: 151 ASANAKSRRPKEKREKERRRHGLGGAREAGGASREENGEVKP--LPRDKIKDKIKER--- 205

Query: 75  TEDEWEKENSSQRLKHRVKKTGG 97
            + E E+E    ++ + +KK  G
Sbjct: 206 -DKEKEREKKKHKVMNEIKKENG 227


>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
           [Homo sapiens]
          Length = 674

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 11  SAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTAS 70
           S+  GG  GP    R            GGG+ GG G   E G+   +G   T  +Q+   
Sbjct: 474 SSSRGGEPGPGPLPRSLSRSNSLPHPAGGGKAGGPGVAAEPGTPFSIGRFATLTLQERRD 533

Query: 71  RKEVTEDEWEKENSSQRLKHRVKKTGGGGGG 101
           R        EKE+        + + G GG G
Sbjct: 534 RGA------EKEHKRYHSLGNISRGGSGGSG 558



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 23  RARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVG 58
           R  RG  +E +     G    GG GG  SG ++P G
Sbjct: 531 RRDRGAEKEHKRYHSLGNISRGGSGGSGSGGEKPSG 566


>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
          Length = 920

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 38  GGGREGGGGGGGESGSQRPVG 58
           GGG  GGGGGGGE+G+  P G
Sbjct: 462 GGGGGGGGGGGGEAGAVAPYG 482



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 38  GGGREGGGGGGGESGSQRPVG 58
           GGG  GGGGGGG  G     G
Sbjct: 456 GGGGGGGGGGGGGGGGGGEAG 476



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 38  GGGREGGGGGGGESG 52
           GGG  GGGGGGG  G
Sbjct: 451 GGGGGGGGGGGGGGG 465



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 38  GGGREGGGGGGGESG 52
           GGG  GGGGGGG  G
Sbjct: 452 GGGGGGGGGGGGGGG 466



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 38  GGGREGGGGGGGESG 52
           GGG  GGGGGGG  G
Sbjct: 453 GGGGGGGGGGGGGGG 467



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 38  GGGREGGGGGGGESG 52
           GGG  GGGGGGG  G
Sbjct: 454 GGGGGGGGGGGGGGG 468



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)

Query: 38  GGGREGGGGGGGESG 52
           GGG  GGGGGGG  G
Sbjct: 455 GGGGGGGGGGGGGGG 469


>gi|4507955 YY1 transcription factor [Homo sapiens]
          Length = 414

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 27 GRSEEEEEEEE--GGGREGGGGGGGESG 52
          G  EEE++++E  GGG  GGGGG G +G
Sbjct: 42 GEEEEEDDDDEDGGGGDHGGGGGHGHAG 69



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)

Query: 10  GSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGG---GGESGSQRPVGLK 60
           GS+  GGG   R++   G+   ++    GG    GGGG   G +   Q+ V +K
Sbjct: 163 GSSSSGGG---RVKKGGGKKSGKKSYLSGGAGAAGGGGADPGNKKWEQKQVQIK 213



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 32 EEEEEEGGGREGGGGGGGESGSQRPVG 58
          EEEEE+    +GGGG  G  G     G
Sbjct: 43 EEEEEDDDDEDGGGGDHGGGGGHGHAG 69


>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
          Length = 1035

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 24/49 (48%), Positives = 25/49 (51%), Gaps = 10/49 (20%)

Query: 7   AREGSAR---EGGGAGPRIRARRGRS-------EEEEEEEEGGGREGGG 45
           AR   AR   E GGAGPR    R  S       EE+EEEEEG  R G G
Sbjct: 170 ARRDGARCGFEEGGAGPRKEHARSDSENWRSLREEQEEEEEGSWRLGAG 218


>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
           sapiens]
          Length = 425

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 9/49 (18%)

Query: 10  GSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVG 58
           G A  GGG G  + A  G +         GG  GGGGGGG +G++R  G
Sbjct: 321 GLAGAGGGGGGAVGAFGGAA---------GGAGGGGGGGGGAGAERDRG 360



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 23  RARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKE 82
           R+R    +   +  + GG  GG GG G S   R   L   R   +  SR           
Sbjct: 230 RSREAHCQSRSDLLKAGGGAGGSGGSGPSAILR---LPSYRFRYRRRSR--------SSS 278

Query: 83  NSSQRLKHRVKKTGGGGGGG 102
            SS+    R    GG GG G
Sbjct: 279 RSSEPSPSRDASPGGPGGPG 298


>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 242

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 16  GGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASR 71
           G  GPR R  RG  +++ E+  GG R  G G G  S    P GL   R V     R
Sbjct: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--SRQPLPAGLHGRRKVGSAPDR 178


>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
           sapiens]
          Length = 242

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 16  GGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTASR 71
           G  GPR R  RG  +++ E+  GG R  G G G  S    P GL   R V     R
Sbjct: 125 GVPGPRGRRHRGEQQQQREQRGGGARAPGPGPG--SRQPLPAGLHGRRKVGSAPDR 178


>gi|51944974 tumor suppressor candidate 1 [Homo sapiens]
          Length = 212

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 6  RAREGSAREG---GGAGPRIRARRGRSEEEEEEEEGGGREGGGGGG-GESGSQRPVGLKV 61
          R R G+ R G   GG G    A  GR         GGG   GGGGG G  G       ++
Sbjct: 6  RMRGGATRRGSCCGGDG----AADGRGPGRSGRARGGGSPSGGGGGVGWRGRADGARQQL 61

Query: 62 -TRLVQKTASRKEV--TEDEWEKENSSQR 87
            R     AS  E     DEW+++N+  R
Sbjct: 62 EERFADLAASHLEAIRARDEWDRQNARLR 90


>gi|224465235 euchromatic histone-lysine N-methyltransferase 1
           isoform 2 [Homo sapiens]
          Length = 808

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 11  SAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTAS 70
           +++E      R +   G SEEE+E  + G  E GG     S          + + +K   
Sbjct: 377 TSKESMSEADRAQKMDGESEEEQESVDTGEEEEGGDESDLSSE--------SSIKKKFLK 428

Query: 71  RKEVTEDEWEKENSSQRLKHRVKKTGGGG 99
           RK  T+  W K    +R + R K +G  G
Sbjct: 429 RKGKTDSPWIKPARKRRRRSRKKPSGALG 457


>gi|224465233 euchromatic histone-lysine N-methyltransferase 1
           isoform 1 [Homo sapiens]
          Length = 1298

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 11  SAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVGLKVTRLVQKTAS 70
           +++E      R +   G SEEE+E  + G  E GG     S          + + +K   
Sbjct: 377 TSKESMSEADRAQKMDGESEEEQESVDTGEEEEGGDESDLSSE--------SSIKKKFLK 428

Query: 71  RKEVTEDEWEKENSSQRLKHRVKKTGGGG 99
           RK  T+  W K    +R + R K +G  G
Sbjct: 429 RKGKTDSPWIKPARKRRRRSRKKPSGALG 457


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 21  RIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRP 56
           R++ +R +  +E+  +E   ++GGGGG G+ G++ P
Sbjct: 293 RMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEP 328



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 21  RIRARRGRSEEEEEEEEGGGREGGGGGGGESGSQRPVG 58
           R +  + ++ +E E+++GGG   G GG  E G++  +G
Sbjct: 298 RSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLG 335



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 19/64 (29%), Positives = 24/64 (37%)

Query: 38  GGGREGGGGGGGESGSQRPVGLKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGG 97
           GGG  GGG  GG SGS  P   +           +  +       + +   K      GG
Sbjct: 42  GGGGGGGGASGGTSGSCSPASSEPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGG 101

Query: 98  GGGG 101
           GGGG
Sbjct: 102 GGGG 105


>gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 209

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 51/107 (47%)

Query: 17  GAGPRIRARRGR-------SEEEEEEEEGGGREG--------------GGGGGGESGSQR 55
           GAG  +R R+G        +E+EEEEEE   ++G              GGG GG  GS+ 
Sbjct: 103 GAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRG 162

Query: 56  PVGLKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGG 102
           P                      W+          R++  GG GGGG
Sbjct: 163 PAA--------------------WD----------RIRVNGGLGGGG 179



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/43 (39%), Positives = 18/43 (41%)

Query: 9   EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGES 51
           E     GGG G R  A   R         GGG  GGG G G+S
Sbjct: 149 EAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDS 191


>gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo
           sapiens]
          Length = 209

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 51/107 (47%)

Query: 17  GAGPRIRARRGR-------SEEEEEEEEGGGREG--------------GGGGGGESGSQR 55
           GAG  +R R+G        +E+EEEEEE   ++G              GGG GG  GS+ 
Sbjct: 103 GAGRSLRKRKGTRTTSDWAAEDEEEEEEAEQQDGPCCRSSLSSSRWEAGGGAGGGGGSRG 162

Query: 56  PVGLKVTRLVQKTASRKEVTEDEWEKENSSQRLKHRVKKTGGGGGGG 102
           P                      W+          R++  GG GGGG
Sbjct: 163 PAA--------------------WD----------RIRVNGGLGGGG 179



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/43 (39%), Positives = 18/43 (41%)

Query: 9   EGSAREGGGAGPRIRARRGRSEEEEEEEEGGGREGGGGGGGES 51
           E     GGG G R  A   R         GGG  GGG G G+S
Sbjct: 149 EAGGGAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGGDGRGDS 191


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.305    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,352,736
Number of Sequences: 37866
Number of extensions: 318395
Number of successful extensions: 8116
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 322
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 2949
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press