Guide to the Human Genome
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Name: LOC100291394 Sequence: fasta or formatted (103aa) NCBI GI: 239748601
Description:

PREDICTED: hypothetical protein XP_002346737

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          6           1
 C cysteine            1.9          2           1
 D aspartate           1.9          2           1
 E glutamate          16.5         17           8
 F phenylalanine       0.0          0           0
 G glycine            24.3         25           7
 H histidine           1.0          1           1
 I isoleucine          1.0          1           1
 K lysine              6.8          7           2
 L leucine             2.9          3           1
 M methionine          1.0          1           1
 N asparagine          1.0          1           1
 P proline             1.9          2           1
 Q glutamine           2.9          3           1
 R arginine           13.6         14           2
 S serine              6.8          7           2
 T threonine           3.9          4           1
 V valine              5.8          6           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346737 
LOC100291586          1.000   PREDICTED: hypothetical protein XP_002345859 
LOC100288032          1.000   PREDICTED: hypothetical protein XP_002342573 
DHX57                 0.096   DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 
AEBP2                 0.080   AE binding protein 2 isoform b 
AEBP2                 0.080   AE binding protein 2 isoform a 
FAM9A                 0.080   family with sequence similarity 9, member A 
PURA                  0.069   purine-rich element binding protein A 
RPGR                  0.064   retinitis pigmentosa GTPase regulator isoform C [Hom...
XYLT1                 0.064   xylosyltransferase I 
LTK                   0.059   leukocyte receptor tyrosine kinase isoform 1 precurs...
ANO8                  0.053   anoctamin 8 
NPAS3                 0.053   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.053   neuronal PAS domain protein 3 isoform 1 
FOXD1                 0.053   forkhead box D1 
FMN2                  0.053   formin 2 
RSBN1L                0.053   round spermatid basic protein 1-like 
DMWD                  0.053   dystrophia myotonica-containing WD repeat motif prot...
AR                    0.053   androgen receptor isoform 1 
YY1                   0.053   YY1 transcription factor 
GIGYF1                0.053   PERQ amino acid rich, with GYF domain 1 
CACNG8                0.053   voltage-dependent calcium channel gamma-8 subunit [H...
LOC100287290          0.048   PREDICTED: hypothetical protein 
LOC100287290          0.048   PREDICTED: hypothetical protein XP_002342446 
TUSC1                 0.048   tumor suppressor candidate 1 
EHMT1                 0.048   euchromatic histone-lysine N-methyltransferase 1 is...
EHMT1                 0.048   euchromatic histone-lysine N-methyltransferase 1 is...
MNX1                  0.048   homeo box HB9 
LOC100288007          0.048   PREDICTED: hypothetical protein 
LOC100288007          0.048   PREDICTED: hypothetical protein XP_002342192 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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