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Search of human proteins with 239753956
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753956 PREDICTED: hypothetical protein [Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753956 PREDICTED: hypothetical protein [Homo sapiens] 416 e-117
gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo ... 412 e-115
gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo ... 390 e-109
gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo sap... 35 0.032
gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo ... 35 0.041
gi|21624641 calcium binding protein 4 [Homo sapiens] 33 0.16
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 33 0.16
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|12707580 paired-like homeobox 2b [Homo sapiens] 32 0.35
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 32 0.35
gi|169212153 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|169211716 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|169211169 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 32 0.46
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 31 0.60
gi|4885433 mitogen-activated protein kinase 8 interacting protei... 31 0.60
gi|194272180 plexin B1 [Homo sapiens] 31 0.78
gi|40254442 plexin B1 [Homo sapiens] 31 0.78
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 31 0.78
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 30 1.0
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 30 1.3
gi|156564407 phospholipase D2 [Homo sapiens] 30 1.3
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 30 1.3
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo... 30 1.3
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 30 1.3
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 30 1.3
>gi|239753956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 416 bits (1070), Expect = e-117
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD
Sbjct: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
Query: 61 EQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
EQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP
Sbjct: 61 EQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
Query: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR
Sbjct: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
Query: 181 SAVNVDKLGQPGRAGAT 197
SAVNVDKLGQPGRAGAT
Sbjct: 181 SAVNVDKLGQPGRAGAT 197
>gi|239748498 PREDICTED: hypothetical protein XP_002346677 [Homo
sapiens]
Length = 197
Score = 412 bits (1058), Expect = e-115
Identities = 195/197 (98%), Positives = 195/197 (98%)
Query: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD
Sbjct: 1 MSEDLLKRPLSAETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGD 60
Query: 61 EQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
EQRYSPCPRRGGDTGAD CPKVP AGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP
Sbjct: 61 EQRYSPCPRRGGDTGADACPKVPGAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTP 120
Query: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR
Sbjct: 121 QSLADGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSR 180
Query: 181 SAVNVDKLGQPGRAGAT 197
SAVNVDKLGQPGRAGAT
Sbjct: 181 SAVNVDKLGQPGRAGAT 197
>gi|239742460 PREDICTED: hypothetical protein XP_002342521 [Homo
sapiens]
Length = 195
Score = 390 bits (1001), Expect = e-109
Identities = 183/186 (98%), Positives = 183/186 (98%)
Query: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG
Sbjct: 10 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 69
Query: 72 GDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 131
GDTGAD CPKVP AGPEV SPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV
Sbjct: 70 GDTGADACPKVPGAGPEVVSPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 129
Query: 132 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 191
AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP
Sbjct: 130 AEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRRCAAQACRALGNPRRSRSAVNVDKLGQP 189
Query: 192 GRAGAT 197
GRAGAT
Sbjct: 190 GRAGAT 195
>gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo
sapiens]
Length = 500
Score = 35.4 bits (80), Expect = 0.032
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 17 LESRPAHAARSCHLGPRQDQLLSGAVKPAR------GGCQSPGKNTGVGDEQRYSPCPRR 70
L S PAH+ L PR QLLSG PA+ C P + T +G+E+ +
Sbjct: 26 LSSSPAHSTALPWLPPRSLQLLSGHSVPAQPTPHLPSACGGPTRVT-LGEERAWR---SH 81
Query: 71 GGDTGADTCPKVPRAGPEVASPHGPGAG 98
G + G TC AG +P G G
Sbjct: 82 GSNAGGHTCLPRRTAGAGSLTPGGERGG 109
>gi|239749167 PREDICTED: hypothetical protein XP_002346933 [Homo
sapiens]
Length = 399
Score = 35.0 bits (79), Expect = 0.041
Identities = 47/145 (32%), Positives = 56/145 (38%), Gaps = 27/145 (18%)
Query: 9 PLSAETGELESRPAHAARSCHL--GPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSP 66
P S G R A A S L GPRQ + LS + +G Q P + VG Q
Sbjct: 228 PSSGTRGVERQRGAACALSVALSGGPRQRRALSLVWRRGQGR-QGPEPPSPVGQAQALEE 286
Query: 67 CPRRGGDTGADTCPKVPRAGPEVASPHGP--GAGPGRTNYNSRHARRHDVTERTTPQSLA 124
G DT A PEV PHGP A PG+ R A R E T L
Sbjct: 287 ACECGVDT----------ARPEVGGPHGPLLVAPPGQ-----RVAVRRRHHEVTAVDDLR 331
Query: 125 DGEAGRVAED-----LC--LRAWNG 142
+A R A + +C +R W G
Sbjct: 332 AEQAARAAPETRVLRVCVRVRVWAG 356
>gi|21624641 calcium binding protein 4 [Homo sapiens]
Length = 275
Score = 33.1 bits (74), Expect = 0.16
Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 39 SGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGADTCPKVPRA---------GPEV 89
+G V P + P E+ +R G +G T P+ P + GP
Sbjct: 23 AGVVTPKSDAEEPPLTRKRSKKERGLRGSRKRTGSSGEQTGPEAPGSSNNPPSTGEGPAG 82
Query: 90 ASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSL-----ADGEAGRVAEDLCLRAWNGFS 144
A P PG R ++ R HD +RT L D E G D A+ F
Sbjct: 83 APPASPGPASSRQSHRHRPDSLHDAAQRTYGPLLNRVFGKDRELGPEELDELQAAFEEFD 142
Query: 145 RTR-GNTSHNK 154
R G SH +
Sbjct: 143 TDRDGYISHRE 153
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 33.1 bits (74), Expect = 0.16
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 44 PARGGCQ-SPGKNTGVGDEQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPG 100
P R GC + G+ G Y P GG G+ P GP P+GP AG G
Sbjct: 5 PYRQGCPGAAGQAPGAPPGSYYPGPPNSGGQYGSGLPPGGGYGGPAPGGPYGPPAGGG 62
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 32.3 bits (72), Expect = 0.27
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 19 SRPAHAARSCHLG--PRQDQLLSGAVKPARGGCQSPGKNTGVGDE-----QRYSPCPRRG 71
S P+ AA LG R+ +L GAV+ + +G E + ++ R G
Sbjct: 314 SPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHG 373
Query: 72 GDTGADTCPKVPRAGPEVASPHGPGAGPGR 101
G +GA T P RA P +P G A P R
Sbjct: 374 GSSGARTLPTPSRARPGKPAPRG-SAPPAR 402
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 32.3 bits (72), Expect = 0.27
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 19 SRPAHAARSCHLG--PRQDQLLSGAVKPARGGCQSPGKNTGVGDE-----QRYSPCPRRG 71
S P+ AA LG R+ +L GAV+ + +G E + ++ R G
Sbjct: 314 SPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHG 373
Query: 72 GDTGADTCPKVPRAGPEVASPHGPGAGPGR 101
G +GA T P RA P +P G A P R
Sbjct: 374 GSSGARTLPTPSRARPGKPAPRG-SAPPAR 402
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 32.0 bits (71), Expect = 0.35
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 22 AHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSP-CPRRGGDTGADTCP 80
A AA++ G + D K A+ P G G +P C GG G +
Sbjct: 164 AAAAKNGSSGKKSDSSRDDESKEAKS--TDPDSTGGPGPNPNPTPSCGANGGGGGGPS-- 219
Query: 81 KVPRAGPEVASPHGPGAGPGR 101
P P A P GPG PG+
Sbjct: 220 --PAGAPGAAGPGGPGGEPGK 238
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 32.0 bits (71), Expect = 0.35
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 52 PGKNTGVGDEQRYSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRH 108
PG T +PC D ADT P A P +SP P A G T +S H
Sbjct: 1107 PGSPTHSLSPSPTTPCRSPAPDVPADTTASPPSASPSSSSPASPAAA-GHTRPSSLH 1162
>gi|169212153 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 31.6 bits (70), Expect = 0.46
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 19 SRPAHAARSCHLGPRQDQLLSGA-----VKPARGGCQSPGK-NTGVGDEQRYSPCPRRGG 72
S A AA SC +GPR + + A + PA C + GK GV + +S P G
Sbjct: 59 SPSALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAG 118
Query: 73 DTGADTCPKVPRAGPEVASPHGPGAG 98
D + +V RAG A P G
Sbjct: 119 DKWEPSPFQVARAGTPQAQLQLPKEG 144
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 31.6 bits (70), Expect = 0.46
Identities = 37/129 (28%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 22 AHAARSCHLGPRQDQLLSGAVKPARGGCQS-PGKNTGVGDEQRYSPCPRRGGDTGADTCP 80
AH+ H + + A+ PARGG + PG G E S + T P
Sbjct: 241 AHSPAHTHFTLTLAEAHTRALTPARGGGEGDPGPIVGGRPENEDS--------LASQTSP 292
Query: 81 KVPRAG-PEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRVAEDLCLRA 139
P A P A PGA G R RR + RT+ + A E R E A
Sbjct: 293 PAPPAPVPSTARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQ-RDREPAVCGA 351
Query: 140 WNGFSRTRG 148
W S G
Sbjct: 352 WPRGSHAAG 360
>gi|169211716 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 31.6 bits (70), Expect = 0.46
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 19 SRPAHAARSCHLGPRQDQLLSGA-----VKPARGGCQSPGK-NTGVGDEQRYSPCPRRGG 72
S A AA SC +GPR + + A + PA C + GK GV + +S P G
Sbjct: 59 SPSALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAG 118
Query: 73 DTGADTCPKVPRAGPEVASPHGPGAG 98
D + +V RAG A P G
Sbjct: 119 DKWEPSPFQVARAGTPQAQLQLPKEG 144
>gi|169211169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 31.6 bits (70), Expect = 0.46
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 19 SRPAHAARSCHLGPRQDQLLSGA-----VKPARGGCQSPGK-NTGVGDEQRYSPCPRRGG 72
S A AA SC +GPR + + A + PA C + GK GV + +S P G
Sbjct: 59 SPSALAAGSCRIGPRSIRFICAALARAPMPPAPRPCTTAGKTQRGVTAKAAHSMEPVAAG 118
Query: 73 DTGADTCPKVPRAGPEVASPHGPGAG 98
D + +V RAG A P G
Sbjct: 119 DKWEPSPFQVARAGTPQAQLQLPKEG 144
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 31.6 bits (70), Expect = 0.46
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 31 GPRQDQLLSGAVKPARGGCQS-PGKN--TGVGDEQRYSPCPRRGGDTGADTCPKVPRAGP 87
GP L G P+ GC+ PG + GV P R GDTG D P P
Sbjct: 1389 GPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTGEDGYPGGPGPPG 1448
Query: 88 EVASPHGPGAGPG 100
+ P G GPG
Sbjct: 1449 PIGDPGPKGFGPG 1461
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 31.2 bits (69), Expect = 0.60
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 40 GAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDTGA-DTCPKVP--RAGP--EVASPHG 94
G P G P R+S P G + G D P P R+GP ++ASP
Sbjct: 46 GGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDA 105
Query: 95 PGAGP 99
PG GP
Sbjct: 106 PGPGP 110
>gi|4885433 mitogen-activated protein kinase 8 interacting protein 1
[Homo sapiens]
Length = 711
Score = 31.2 bits (69), Expect = 0.60
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
AE E + AAR GP + + SG +RG QS G++ G G Y P
Sbjct: 106 AEDDEEDDDEERAARRPGAGPPKAE--SGQEPASRGQGQSQGQSQGPGSGDTYRP----K 159
Query: 72 GDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRV 131
T + P+VPR+ + + +H+ + V+ ++P L GE
Sbjct: 160 RPTTLNLFPQVPRSQDTL----------NNNSLGKKHSWQDRVSRSSSP--LKTGEQTPP 207
Query: 132 AEDLCL 137
E +CL
Sbjct: 208 HEHICL 213
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 0.78
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 27 SCHLGPRQDQLLSGAVKP---ARGGCQSPGKNTGVGDEQRYSPCP-----RRGGDTGADT 78
SC GP S V P ARGG P + + +P P G + A
Sbjct: 665 SCDAGPMVASHQSPLVSPDPPARGG---PSPSPPTAPKALATPAPDTLPVEPGAPSTATA 721
Query: 79 CPKVPRAGPEVASPHGPGAGPGR-TNYNSRHARRHDVTERTTPQS 122
P A P + SP GP AG G ++ S + H+ +PQ+
Sbjct: 722 SDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQN 766
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 0.78
Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 27 SCHLGPRQDQLLSGAVKP---ARGGCQSPGKNTGVGDEQRYSPCP-----RRGGDTGADT 78
SC GP S V P ARGG P + + +P P G + A
Sbjct: 665 SCDAGPMVASHQSPLVSPDPPARGG---PSPSPPTAPKALATPAPDTLPVEPGAPSTATA 721
Query: 79 CPKVPRAGPEVASPHGPGAGPGR-TNYNSRHARRHDVTERTTPQS 122
P A P + SP GP AG G ++ S + H+ +PQ+
Sbjct: 722 SDISPGASPSLLSPWGPWAGSGSISSPGSTGSPLHEEPSPPSPQN 766
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 0.78
Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 17/97 (17%)
Query: 40 GAVKPARGGCQSPG-------KNTGVGDEQRYSPCPRRGGDTGADTCPKVPRAGPEVAS- 91
G PARG S G K +GD R +P + G TG P +P G + A
Sbjct: 885 GQQNPARGPHPSQGPIPFQQQKTPLLGDGPR-APFNQEGQSTGPP--PLIPGLGQQGAQG 941
Query: 92 ---PHGPGAGPGRTNYNSRHARRH---DVTERTTPQS 122
P PG GPG +SR H ++ER QS
Sbjct: 942 RIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQS 978
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 1.0
Identities = 35/134 (26%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 65 SPCPRRGGDTGADTCPKVPRAGPEV-------ASPHGPGAGPGRTNYNSRHARRHDVTER 117
S + G + G P++P A ++ + PHG G G AR R
Sbjct: 35 SSSAQSGPELGLSLGPRLPSASSKLRVFTGYFSVPHGVGKSAGAAAGEEGGARLQ--ATR 92
Query: 118 TTPQSLADGEAGRVAEDLCLRAWNG---------FSRTRGNTSHNKRQLWWNVQRRCAAQ 168
T P + +G +VA R W G + RG S W R Q
Sbjct: 93 TWPAGILEG-GPQVAARGGGRGWEGGGLGARRAVTAARRGGASRPLAGEPWREAARRRPQ 151
Query: 169 ACRALGNPRRSRSA 182
C G R SRSA
Sbjct: 152 QCPQWGRARESRSA 165
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 30.4 bits (67), Expect = 1.0
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 17 LESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNT----------GVGDEQRYSP 66
L S PA AA G + G+V + GG QSP ++ GV D R SP
Sbjct: 116 LSSLPAGAALCLKYGESASR---GSVAESSGGEQSPDDDSDGRCELVLRAGVADP-RASP 171
Query: 67 CPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPG 100
GG A+ C G P G G G G
Sbjct: 172 GAGGGGAKAAEGCSNAHLHGGASVPPGGLGGGGG 205
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 30.0 bits (66), Expect = 1.3
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 12 AETGELESRPAHAARSCHLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRG 71
AE R + RS L P L S + A GG +S G D + P RG
Sbjct: 32 AEEEGAGGRQDPSRRSIRLRP----LPSPSPSAAAGGTESRSSALGAADSEG----PARG 83
Query: 72 GDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEA 128
+ T R +AS G G G T S H HD E + +A+G+A
Sbjct: 84 AGKSS-TNGDCRRFRGSLASLGSRGGGSGGTGSGSSHGHLHDSAEER--RLIAEGDA 137
>gi|156564407 phospholipase D2 [Homo sapiens]
Length = 933
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 64 YSPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSR------HARRHDVTER 117
YSP D G P +PRAGPE ++ H NY +R + H +TE
Sbjct: 133 YSPAR----DAGNREMPSLPRAGPEGSTRHAASKQKYLENYLNRLLTMSFYRNYHAMTEF 188
Query: 118 TTPQSLA-DGEAGRVAEDLCLRAWNGFSRTRGNTSHNKRQLWWNVQRR 164
L+ + GR + +R +G R G T + Q+ + +R
Sbjct: 189 LEVSQLSFIPDLGRKGLEGMIRKRSGGHRVPGLTCCGRDQVCYRWSKR 236
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 30.0 bits (66), Expect = 1.3
Identities = 35/120 (29%), Positives = 42/120 (35%), Gaps = 20/120 (16%)
Query: 18 ESRPAHAARSCHLGPRQDQLLSGAVKP--ARG-----------GCQSPGKNTGVGDEQRY 64
E P AR LGP L A P RG + PG+ GV D +R
Sbjct: 413 EPAPETPARPLALGPLPRPGLRSARPPRQCRGEHRLGPHAPMPSPRCPGEAQGVTDGRRA 472
Query: 65 SPCPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLA 124
SP G T P+ P A P G GAGP R + R +P +A
Sbjct: 473 SPSAPGGDQDRVSTTPQ-PTAQP------GSGAGPQRPGPTQKRGGRGVRVPEGSPARIA 525
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 30.0 bits (66), Expect = 1.3
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 12 AETGELESRPAHAARSC--HLGPRQ-DQLLSGAVKPAR--GGCQSPGKNTGVGDEQRYSP 66
A TG + P R+ HL PR+ QL S ++ A G CQ TG G P
Sbjct: 227 APTGSHRTGPGCTRRALLGHLPPRRCSQLRSLGLRRAELEGECQHERLGTGHGWSVAARP 286
Query: 67 CPRRGGDTGADTCPKVPRAGPEVASPHGPGAGPGRTNYNSR 107
RRGG P PE P GA T SR
Sbjct: 287 GARRGGRRPRSPSPARGEPEPE---PERSGAARSGTGAESR 324
>gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo
sapiens]
Length = 1544
Score = 30.0 bits (66), Expect = 1.3
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 29 HLGPRQDQLLSGAVKPARGGCQSPGKNTGVGDEQRYSPCPRRGGDT-GADTCPKVPRAGP 87
H+ Q+QL G +P + +GD S GD G C + P
Sbjct: 245 HIPQLQEQLSKATGSAQDGAVVTPSRP--LGDTLTVSEAETDPGDVLGRTDCSSGDASRP 302
Query: 88 EVASPHGPGAGPGRTNYNSRHARRHDVTERTTPQSLADGEAGRVA 132
+ P +GP Y + + + + T QSL + R+A
Sbjct: 303 SSDNADSPKSGPKERIYLEENPEKSETIQDTDTQSLVGSPSTRIA 347
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 7 KRPLSAETGELESRPAHAARSCHLG--PRQDQLLSGAVKP-ARGGC-----QSPGKNTGV 58
K L G + P +R C LG P S +P R C Q+P
Sbjct: 47 KGDLRGAAGGRTTPPGGGSRGCSLGVSPGPGTRHSAGTRPLVREPCGPTSSQNPELVIPE 106
Query: 59 GDEQRYSPC--PRRGGDTGADTCPKVPRAGPEVASP 92
G + R PC P RGGD ++C R P +P
Sbjct: 107 GLQAREGPCRSPARGGDCSRNSCLAWHRGAPAGETP 142
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 30.0 bits (66), Expect = 1.3
Identities = 28/96 (29%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 7 KRPLSAETGELESRPAHAARSCHLG--PRQDQLLSGAVKP-ARGGC-----QSPGKNTGV 58
K L G + P +R C LG P S +P R C Q+P
Sbjct: 47 KGDLRGAAGGRTTPPGGGSRGCSLGVSPGPGTRHSAGTRPLVREPCGPTSSQNPELVIPE 106
Query: 59 GDEQRYSPC--PRRGGDTGADTCPKVPRAGPEVASP 92
G + R PC P RGGD ++C R P +P
Sbjct: 107 GLQAREGPCRSPARGGDCSRNSCLAWHRGAPAGETP 142
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,783,777
Number of Sequences: 37866
Number of extensions: 546007
Number of successful extensions: 1869
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 215
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.