Guide to the Human Genome
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Name: LOC100128559 Sequence: fasta or formatted (190aa) NCBI GI: 169211716
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {190aa} PREDICTED: hypothetical protein
alt mRNA {190aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         27           2
 C cysteine            2.6          5           1
 D aspartate           0.5          1           1
 E glutamate           2.6          5           1
 F phenylalanine       2.1          4           1
 G glycine             9.5         18           3
 H histidine           2.1          4           1
 I isoleucine          2.1          4           1
 K lysine              3.2          6           1
 L leucine             6.3         12           1
 M methionine          2.1          4           1
 N asparagine          0.5          1           1
 P proline            15.8         30           4
 Q glutamine           5.8         11           1
 R arginine            8.4         16           1
 S serine             11.6         22           3
 T threonine           5.8         11           2
 V valine              3.2          6           2
 W tryptophan          1.6          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128559          1.000   PREDICTED: hypothetical protein 
LOC100128559          1.000   PREDICTED: hypothetical protein 
LOC730163             0.130   PREDICTED: hypothetical protein 
LOC730163             0.130   PREDICTED: hypothetical protein 
LOC730163             0.122   PREDICTED: hypothetical protein 
LOC100129214          0.057   PREDICTED: hypothetical protein 
LOC100129214          0.057   PREDICTED: hypothetical protein 
LOC100129214          0.057   PREDICTED: hypothetical protein 
HCN3                  0.051   hyperpolarization activated cyclic nucleotide-gated ...
SAMD1                 0.046   sterile alpha motif domain containing 1 
NACA                  0.043   nascent polypeptide-associated complex alpha subuni...
CASKIN1               0.041   CASK interacting protein 1 
SYN1                  0.038   synapsin I isoform Ib 
LOC100287141          0.038   PREDICTED: hypothetical protein XP_002343631 
SYNPO                 0.038   synaptopodin isoform A 
LOC645781             0.035   PREDICTED: similar to mCG141871 
TAF4                  0.035   TBP-associated factor 4 
SNRPN                 0.035   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.035   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.035   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.035   small nuclear ribonucleoprotein polypeptide N 
ATN1                  0.035   atrophin-1 
ATN1                  0.035   atrophin-1 
SNRPN                 0.035   small nuclear ribonucleoprotein polypeptide N 
MBD6                  0.035   methyl-CpG binding domain protein 6 
WASF1                 0.035   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.035   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.035   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.035   Wiskott-Aldrich syndrome protein family member 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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