Guide to the Human Genome
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Name: LOC100293471 Sequence: fasta or formatted (197aa) NCBI GI: 239753956
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         22           2
 C cysteine            3.6          7           1
 D aspartate           4.6          9           1
 E glutamate           4.6          9           1
 F phenylalanine       0.5          1           1
 G glycine            12.2         24           2
 H histidine           3.0          6           1
 I isoleucine          0.0          0           0
 K lysine              3.0          6           1
 L leucine             6.6         13           2
 M methionine          0.5          1           1
 N asparagine          4.6          9           1
 P proline             8.1         16           1
 Q glutamine           4.6          9           1
 R arginine           13.2         26           2
 S serine              7.1         14           1
 T threonine           5.6         11           2
 V valine              4.6          9           1
 W tryptophan          1.5          3           2
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290403          0.990   PREDICTED: hypothetical protein XP_002346677 
LOC100288644          0.934   PREDICTED: hypothetical protein XP_002342521 
ADSSL1                0.026   adenylosuccinate synthase like 1 isoform 1 
LOC100289963          0.026   PREDICTED: hypothetical protein XP_002346933 
CABP4                 0.020   calcium binding protein 4 
PEF1                  0.020   penta-EF-hand domain containing 1 
FLJ31945              0.018   PREDICTED: hypothetical protein 
FLJ31945              0.018   PREDICTED: hypothetical protein 
PHOX2B                0.018   paired-like homeobox 2b 
MAST3                 0.018   microtubule associated serine/threonine kinase 3 [H...
LOC100128559          0.018   PREDICTED: hypothetical protein 
LOC100292934          0.018   PREDICTED: hypothetical protein 
LOC100128559          0.018   PREDICTED: hypothetical protein 
LOC100128559          0.018   PREDICTED: hypothetical protein 
COL4A4                0.018   alpha 4 type IV collagen precursor 
RAB11FIP3             0.015   rab11-family interacting protein 3 isoform 1 
MAPK8IP1              0.015   mitogen-activated protein kinase 8 interacting protei...
PLXNB1                0.015   plexin B1 
PLXNB1                0.015   plexin B1 
WDR33                 0.015   WD repeat domain 33 isoform 1 
LOC100287063          0.013   PREDICTED: hypothetical protein 
BHLHE22               0.013   basic helix-loop-helix domain containing, class B, 5...
HCN4                  0.013   hyperpolarization activated cyclic nucleotide-gated p...
PLD2                  0.013   phospholipase D2 
LOC100291807          0.013   PREDICTED: hypothetical protein XP_002345507 
LOC100293438          0.013   PREDICTED: hypothetical protein 
ARHGEF12              0.013   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ZNF837                0.013   zinc finger protein 837 isoform 1 
ZNF837                0.013   zinc finger protein 837 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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