Guide to the Human Genome
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Name: LOC100290403 Sequence: fasta or formatted (197aa) NCBI GI: 239748498
Description:

PREDICTED: hypothetical protein XP_002346677

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         23           2
 C cysteine            3.6          7           1
 D aspartate           4.6          9           1
 E glutamate           4.6          9           1
 F phenylalanine       0.5          1           1
 G glycine            12.7         25           2
 H histidine           3.0          6           1
 I isoleucine          0.0          0           0
 K lysine              3.0          6           1
 L leucine             6.6         13           2
 M methionine          0.5          1           1
 N asparagine          4.6          9           1
 P proline             8.1         16           1
 Q glutamine           4.6          9           1
 R arginine           12.7         25           2
 S serine              7.1         14           1
 T threonine           5.1         10           2
 V valine              4.6          9           1
 W tryptophan          1.5          3           2
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346677 
LOC100293471          0.990   PREDICTED: hypothetical protein 
LOC100288644          0.944   PREDICTED: hypothetical protein XP_002342521 
PLXNB1                0.026   plexin B1 
PLXNB1                0.026   plexin B1 
COL4A4                0.026   alpha 4 type IV collagen precursor 
LOC100289963          0.026   PREDICTED: hypothetical protein XP_002346933 
CABP4                 0.026   calcium binding protein 4 
WDR33                 0.023   WD repeat domain 33 isoform 1 
ADSSL1                0.020   adenylosuccinate synthase like 1 isoform 1 
PEF1                  0.020   penta-EF-hand domain containing 1 
PHOX2B                0.018   paired-like homeobox 2b 
ELN                   0.018   elastin isoform e precursor 
ELN                   0.018   elastin isoform d precursor 
ELN                   0.018   elastin isoform c precursor 
ELN                   0.018   elastin isoform b precursor 
ELN                   0.018   elastin isoform a precursor 
COL3A1                0.018   collagen type III alpha 1 preproprotein 
LOC729570             0.018   PREDICTED: hypothetical protein 
LOC729570             0.018   PREDICTED: hypothetical protein 
LOC729570             0.018   PREDICTED: hypothetical protein 
BSN                   0.018   bassoon protein 
KIAA1543              0.018   NEZHA isoform 2 
KIAA1543              0.018   NEZHA isoform 1 
FAM181B               0.018   hypothetical protein LOC220382 
HCN4                  0.018   hyperpolarization activated cyclic nucleotide-gated p...
MAGI2                 0.018   membrane associated guanylate kinase, WW and PDZ dom...
COL4A3                0.018   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.018   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.018   alpha 3 type IV collagen isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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