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Search of human proteins with 239753808
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 176 3e-45
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 176 3e-45
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 156 3e-39
gi|50344744 beta-defensin 108B [Homo sapiens] 155 9e-39
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 116 3e-27
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 46 7e-06
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 46 7e-06
gi|83582794 beta-defensin 110 [Homo sapiens] 41 2e-04
gi|16905373 beta-defensin 118 [Homo sapiens] 39 0.001
gi|82734214 beta-defensin 111 [Homo sapiens] 38 0.002
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 37 0.003
gi|83582800 beta-defensin 116 [Homo sapiens] 37 0.003
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 37 0.003
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 35 0.010
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 34 0.022
gi|82734223 beta-defensin 124 [Homo sapiens] 33 0.037
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 33 0.037
gi|58865339 defensin, beta 121 [Homo sapiens] 33 0.049
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 33 0.064
gi|83582798 beta-defensin 115 [Homo sapiens] 32 0.083
gi|22748617 defensin, beta 105A precursor [Homo sapiens] 32 0.14
gi|103485147 defensin, beta 107B precursor [Homo sapiens] 32 0.14
gi|103485145 defensin, beta 107A precursor [Homo sapiens] 32 0.14
gi|103485141 defensin, beta 105B precursor [Homo sapiens] 32 0.14
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 30 0.41
gi|17402931 sperm associated antigen 11B isoform C preproprotein... 30 0.54
gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens] 28 1.6
gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens] 28 1.6
gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens] 28 1.6
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 28 1.6
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 176 bits (447), Expect = 3e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MKTNFFLSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCL 60
MKTNFFLSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCL
Sbjct: 1 MKTNFFLSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCL 60
Query: 61 NSRPCCLPLGHQPRIESTTPKKD 83
NSRPCCLPLGHQPRIESTTPKKD
Sbjct: 61 NSRPCCLPLGHQPRIESTTPKKD 83
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 176 bits (447), Expect = 3e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MKTNFFLSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCL 60
MKTNFFLSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCL
Sbjct: 1 MKTNFFLSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCL 60
Query: 61 NSRPCCLPLGHQPRIESTTPKKD 83
NSRPCCLPLGHQPRIESTTPKKD
Sbjct: 61 NSRPCCLPLGHQPRIESTTPKKD 83
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 156 bits (395), Expect = 3e-39
Identities = 72/73 (98%), Positives = 73/73 (100%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70
+RIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 60
Query: 71 HQPRIESTTPKKD 83
HQPRIESTTPKKD
Sbjct: 61 HQPRIESTTPKKD 73
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 155 bits (391), Expect = 9e-39
Identities = 71/73 (97%), Positives = 73/73 (100%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70
+RIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNS+PCCLPLG
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSQPCCLPLG 60
Query: 71 HQPRIESTTPKKD 83
HQPRIESTTPKKD
Sbjct: 61 HQPRIESTTPKKD 73
>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
Length = 111
Score = 116 bits (291), Expect = 3e-27
Identities = 51/53 (96%), Positives = 52/53 (98%)
Query: 31 RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTPKKD 83
RGKFKEICERPNGSC+DFCLETEIHVGRCLNSRPCCLPLGHQPRIESTT KKD
Sbjct: 59 RGKFKEICERPNGSCQDFCLETEIHVGRCLNSRPCCLPLGHQPRIESTTHKKD 111
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 15 VLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 72
VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL +
Sbjct: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64
Query: 73 PRIESTTP 80
+ T P
Sbjct: 65 SLLNRTKP 72
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 15 VLLFAIFFFMSQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQ 72
VLL AI + Q LP R +F+ IC CR C E +GRC N+ CCL +
Sbjct: 5 VLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCLRKWDE 64
Query: 73 PRIESTTP 80
+ T P
Sbjct: 65 SLLNRTKP 72
>gi|83582794 beta-defensin 110 [Homo sapiens]
Length = 62
Score = 41.2 bits (95), Expect = 2e-04
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 16 LLFAIFFFMSQVLPARGKFK-----EICERPNGSCRDFCLETEIHVGRCLNSR-PCCL 67
L F I F +LPAR F+ E CE+ G C+ FC + E G C+ R CC+
Sbjct: 5 LFFFILHFWVTILPARSNFEPKYRFERCEKVRGICKTFCDDVEYDYGYCIKWRSQCCV 62
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70
+++ +L + + QV+PA K+ C +G CR C + E C N R CC+P
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKK-CWNRSGHCRKQCKDGEAVKDTCKNLRACCIPSN 59
Query: 71 H-QPRIESTTP 80
R+ +T+P
Sbjct: 60 EDHRRVPATSP 70
>gi|82734214 beta-defensin 111 [Homo sapiens]
Length = 67
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 16 LLFAIFFFMSQVLPARGKFKEI--------CERPNGSCRDFCLETEIHVGRCLN-SRPCC 66
L F I F +LPA+ K+ E C NG C++ C E EI + C+ CC
Sbjct: 5 LFFFILHFWVTILPAKKKYPEYGSLDLRRECRIGNGQCKNQCHENEIRIAYCIRPGTHCC 64
Query: 67 L 67
L
Sbjct: 65 L 65
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
+R + LFA+ FF++ PA+ F E C + G+C++ C + E + C S CC
Sbjct: 1 MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 9 SAVRIAVLLFAIFFFMSQVLPA------RGKFKEI---CERPNGSCRDFCLETEIHVGRC 59
S ++ ++ AI ++Q P GK +E CE G CR+ C E EI C
Sbjct: 2 SVMKPCLMTIAILMILAQKTPGGLFRSHNGKSREPWNPCELYQGMCRNACREYEIQYLTC 61
Query: 60 LNSRPCCLPL 69
N + CCL L
Sbjct: 62 PNDQKCCLKL 71
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 37.4 bits (85), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKF-KEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
+R + LFA+ FF++ PA+ F E C + G+C++ C + E + C S CC
Sbjct: 1 MRTFLFLFAVLFFLT---PAKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCC 54
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 35.4 bits (80), Expect = 0.010
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70
++ +L+ A F++QV+PA + G CR C E + C SR CC+
Sbjct: 1 MKFLLLVLAALGFLTQVIPASAGGSKCVSNTPGYCRTCCHWGETALFMCNASRKCCISYS 60
Query: 71 HQPR 74
P+
Sbjct: 61 FLPK 64
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 9 SAVRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRP 64
+AVR+ VLL + F + P RG C +G CR D C E +G C
Sbjct: 62 AAVRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMK 121
Query: 65 CC 66
CC
Sbjct: 122 CC 123
>gi|82734223 beta-defensin 124 [Homo sapiens]
Length = 71
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 15 VLLFAIFFFMSQVLPA-RGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLGHQP 73
+LLF + + +P+ R +FK C + G+C+ +C E ++ C ++ CCL +P
Sbjct: 4 LLLFLVALLVLGHVPSGRSEFKR-CWKGQGACQTYCTRQETYMHLCPDASLCCLSYALKP 62
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFK-EICERPN-GSCRDFCLETEIHVGRCLNSRPCCLP 68
+ I +L F I +++V +G F+ + C + N G CR CL+TE ++ C N CC+
Sbjct: 1 MNILMLTFIICGLLTRV--TKGSFEPQKCWKNNVGHCRRRCLDTERYILLCRNKLSCCIS 58
Query: 69 L 69
+
Sbjct: 59 I 59
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 33.1 bits (74), Expect = 0.049
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70
+++ +LL + ++QV P C +G CR C E+E++ C CC+
Sbjct: 1 MKLLLLLLTVTLLLAQVTPVMK-----CWGKSGRCRTTCKESEVYYILCKTEAKCCVDPK 55
Query: 71 HQP 73
+ P
Sbjct: 56 YVP 58
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 32.7 bits (73), Expect = 0.064
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 11 VRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCCLPLG 70
+++ +L + +SQ+ P + C G CR C + E C+N++ CC+
Sbjct: 1 MKLLLLTLTVLLLLSQLTPGG---TQRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPK 57
Query: 71 HQPR 74
+QP+
Sbjct: 58 YQPK 61
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 32.3 bits (72), Expect = 0.083
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 7 LSSAVRIAVLLFAIFFFMSQVLPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
LS ++++VL + ++Q P G + C G CR C E E +C CC
Sbjct: 9 LSGDIKLSVLALVVLVVLAQTAPD-GWIRR-CYYGTGRCRKSCKEIERKKEKCGEKHICC 66
Query: 67 LP 68
+P
Sbjct: 67 VP 68
>gi|22748617 defensin, beta 105A precursor [Homo sapiens]
Length = 78
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 17 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 61
LFA+FF + SQ P+ G+F E C+ G CR CLE E G C
Sbjct: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69
Query: 62 SRPCC 66
+ CC
Sbjct: 70 NFLCC 74
>gi|103485147 defensin, beta 107B precursor [Homo sapiens]
Length = 70
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 7 LSSAVRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 59
+ A++I V + A ++Q+ AR I +R G C CL E+ +G C
Sbjct: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
>gi|103485145 defensin, beta 107A precursor [Homo sapiens]
Length = 70
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 7 LSSAVRIAVLLFAIFFFMSQVLPARGKFKE--ICERPNGSCRDFCLETEIHVGRC 59
+ A++I V + A ++Q+ AR I +R G C CL E+ +G C
Sbjct: 1 MPGAMKIFVFILAALILLAQIFQARTAIHRALISKRMEGHCEAECLTFEVKIGGC 55
>gi|103485141 defensin, beta 105B precursor [Homo sapiens]
Length = 78
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 17 LFAIFFFM-------------SQVLPARGKFK--EICERPNGSCRDFCLETEIHVGRCLN 61
LFA+FF + SQ P+ G+F E C+ G CR CLE E G C
Sbjct: 11 LFAMFFILVQLPSGCQAGLDFSQPFPS-GEFAVCESCKLGRGKCRKECLENEKPDGNCRL 69
Query: 62 SRPCC 66
+ CC
Sbjct: 70 NFLCC 74
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 42 NGSCRDFCLETEIHVGRCLNSRPCCLP 68
+G CR C + E + RC N + CC+P
Sbjct: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
>gi|17402931 sperm associated antigen 11B isoform C preproprotein
[Homo sapiens]
Length = 113
Score = 29.6 bits (65), Expect = 0.54
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 38 CERPNGSCRDFCLETEIHVGRCLNSR-PCCL 67
C R G C+++C E VG C + CCL
Sbjct: 82 CRRSEGFCQEYCNYMETQVGYCSKKKDACCL 112
>gi|239754319 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 11 VRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
++I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
>gi|239748864 PREDICTED: defensin, beta 133 [Homo sapiens]
Length = 61
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 11 VRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
++I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
>gi|239742893 PREDICTED: beta-defensin 133 [Homo sapiens]
Length = 61
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 11 VRIAVLLFAIFFFMSQV---LPARGKFKEICERPNGSCRDFCLETEIHVGRCLNSRPCC 66
++I V LF +FFF+ + + K C G CR C + E +G C C
Sbjct: 1 MKIHVFLFVLFFFLVPIATRMKCAVKDTYSCFIMRGKCRHECHDFEKPIGFCTKLNANC 59
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 43 GSCRDFCLETEIHVGRCLNSRPCCL 67
G CR C E+ C N R CCL
Sbjct: 31 GHCRKICRVNEVPEALCENGRYCCL 55
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.142 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,368,430
Number of Sequences: 37866
Number of extensions: 137482
Number of successful extensions: 376
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 339
Number of HSP's gapped (non-prelim): 46
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.