Guide to the Human Genome
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Name: DEFB107B Sequence: fasta or formatted (70aa) NCBI GI: 103485147
Description:

defensin, beta 107B precursor

Referenced in:

Additional Host Defense Functions
DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         10           2
 C cysteine            7.1          5           2
 D aspartate           0.0          0           0
 E glutamate           7.1          5           1
 F phenylalanine       7.1          5           1
 G glycine             5.7          4           2
 H histidine           4.3          3           1
 I isoleucine         10.0          7           1
 K lysine              8.6          6           2
 L leucine            10.0          7           2
 M methionine          4.3          3           1
 N asparagine          1.4          1           1
 P proline             2.9          2           1
 Q glutamine           2.9          2           1
 R arginine            7.1          5           1
 S serine              1.4          1           1
 T threonine           2.9          2           1
 V valine              2.9          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   defensin, beta 107B precursor 
DEFB107A              1.000   defensin, beta 107A precursor 
LOC100133128          0.058   PREDICTED: hypothetical protein 
LOC100133128          0.058   PREDICTED: hypothetical protein 
LOC100133128          0.050   PREDICTED: hypothetical protein 
DEFB108B              0.050   beta-defensin 108B 
DEFB133               0.033   PREDICTED: defensin, beta 133 
DEFB133               0.033   PREDICTED: defensin, beta 133 
DEFB133               0.033   PREDICTED: beta-defensin 133 
DEFB105A              0.017   defensin, beta 105A precursor 
DEFB118               0.017   beta-defensin 118 
DEFB105B              0.017   defensin, beta 105B precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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