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Search of human proteins with 239753457
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo
sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo ... 677 0.0
gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo ... 677 0.0
gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo ... 593 e-170
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 44 2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.003
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.014
gi|27886539 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.023
gi|27886541 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.023
gi|209862843 nuclear factor of activated T-cells, cytoplasmic, c... 37 0.023
gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens] 37 0.023
gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens] 37 0.023
gi|118402590 myosin XV [Homo sapiens] 37 0.030
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 37 0.030
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 36 0.040
gi|8924248 SRY-box 18 [Homo sapiens] 36 0.040
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.052
gi|195947369 junction-mediating and regulatory protein [Homo sap... 36 0.052
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 35 0.068
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 35 0.068
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 35 0.088
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 35 0.088
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 35 0.088
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 35 0.12
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 35 0.12
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 35 0.12
gi|239754965 PREDICTED: hypothetical protein [Homo sapiens] 34 0.15
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 34 0.15
gi|48762934 alpha 2 type I collagen [Homo sapiens] 34 0.20
gi|226823326 methenyltetrahydrofolate synthetase domain containi... 33 0.26
gi|226823324 methenyltetrahydrofolate synthetase domain containi... 33 0.26
>gi|239753457 PREDICTED: hypothetical protein XP_002345662 [Homo
sapiens]
Length = 319
Score = 677 bits (1747), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
Query: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
Query: 301 DGKERALRAPVRGPWLRPF 319
DGKERALRAPVRGPWLRPF
Sbjct: 301 DGKERALRAPVRGPWLRPF 319
>gi|239741918 PREDICTED: hypothetical protein XP_002342351 [Homo
sapiens]
Length = 319
Score = 677 bits (1747), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
Query: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
Query: 301 DGKERALRAPVRGPWLRPF 319
DGKERALRAPVRGPWLRPF
Sbjct: 301 DGKERALRAPVRGPWLRPF 319
>gi|239748022 PREDICTED: hypothetical protein XP_002346495 [Homo
sapiens]
Length = 287
Score = 593 bits (1529), Expect = e-170
Identities = 287/319 (89%), Positives = 287/319 (89%), Gaps = 32/319 (10%)
Query: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS
Sbjct: 1 MRSQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS 60
Query: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG
Sbjct: 61 ASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAG 120
Query: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV
Sbjct: 121 WGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSV 180
Query: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS
Sbjct: 181 GPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
Query: 241 IRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGKPE 300
IRPGPEPGCQASRVIKGGLGPFIEVEP E
Sbjct: 241 IRPGPEPGCQASRVIKGGLGPFIEVEP--------------------------------E 268
Query: 301 DGKERALRAPVRGPWLRPF 319
DGKERALRAPVRGPWLRPF
Sbjct: 269 DGKERALRAPVRGPWLRPF 287
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 43.5 bits (101), Expect = 2e-04
Identities = 63/219 (28%), Positives = 77/219 (35%), Gaps = 31/219 (14%)
Query: 106 AAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQ 165
A P +AL A G P GP + PP R G GS L +PPL +
Sbjct: 178 AGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAP---GPPLGSMAAL---RPPLE-E 230
Query: 166 PAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVF 225
PA E G +G GL E+ A ASA VG +G +
Sbjct: 231 PAAPREL----GLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPL 286
Query: 226 TALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPF-----IEVEPETGECSASAAPPA 280
MPL P PEP V++G L P + + P PP
Sbjct: 287 ALAMPL-----------PEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRP--PRPEPPP 333
Query: 281 GQAGREVG-PAGHDHRVGKPEDGKERALRAPVRGPWLRP 318
G EV P G D + GKPE K R +R W P
Sbjct: 334 GLMALEVPEPLGEDKKKGKPEKLK-RCIRTAAGSSWEDP 371
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.0 bits (92), Expect = 0.003
Identities = 57/211 (27%), Positives = 73/211 (34%), Gaps = 33/211 (15%)
Query: 108 PACLALPGLLGAGWGACRPALYGPSLC------APPSLRGSAEDGGRSGSCTRLPRA--- 158
PA A PG G G RP P APP+ + G +GSC +P A
Sbjct: 91 PAGRARPG----GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAV 146
Query: 159 ------QPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212
P +PAG + A+ G GPG G GP P A A + + G
Sbjct: 147 AAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP---GPGPGPGKPAGPGAAQTLNG--- 200
Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRV----IKGGLGPFIEVEPE 268
AAL L A ++L P ++ P P+P + + G P P
Sbjct: 201 -SAAL---LNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS 256
Query: 269 TGECSASAAPPAGQAGREVGPAGHDHRVGKP 299
A AAP A PA G P
Sbjct: 257 PPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287
Score = 37.0 bits (84), Expect = 0.023
Identities = 42/167 (25%), Positives = 60/167 (35%), Gaps = 17/167 (10%)
Query: 74 AGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSL 133
A P P PS + P P P APA LA P AG PA+ P+
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPP----PPPPAPATLARPPGHPAGPPTAAPAVPPPA- 301
Query: 134 CAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRP 193
+A++GG +G+ A P PAG S Q G + P G + P+
Sbjct: 302 --------AAQNGGSAGAAP----APAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKR 349
Query: 194 RAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
A+ G A++ +G + P + P PG+
Sbjct: 350 VVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGT 396
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.014
Identities = 53/189 (28%), Positives = 70/189 (37%), Gaps = 23/189 (12%)
Query: 118 GAGWGAC--------RPALYGP---SLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQ- 165
G+GWG+ R +G S +PP S R + P PP R +
Sbjct: 305 GSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPT--PPARGKE 362
Query: 166 ---PAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLE 222
P + + +GG + G G G R R R +SASA G R A
Sbjct: 363 SPSPRSAPSSQGRGGRAAG-GAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSR 421
Query: 223 VVFTALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQ 282
+ A + G G+ PGPEPG + GG G + P AS +P G
Sbjct: 422 SLSRARSSSDSGSGR-GAPGPGPEPGSERGH---GGHGKRAKERPPRAR-PASTSPSPGA 476
Query: 283 AGREVGPAG 291
GR GP G
Sbjct: 477 HGRRGGPEG 485
>gi|27886539 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 isoform B [Homo sapiens]
Length = 921
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291
PG+ RPGP P Q R+ G I+ + T + +A PP +EV PAG
Sbjct: 839 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 891
>gi|27886541 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 isoform C [Homo sapiens]
Length = 925
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291
PG+ RPGP P Q R+ G I+ + T + +A PP +EV PAG
Sbjct: 839 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 891
>gi|209862843 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 isoform D [Homo sapiens]
Length = 901
Score = 37.0 bits (84), Expect = 0.023
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 238 PGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAG 291
PG+ RPGP P Q R+ G I+ + T + +A PP +EV PAG
Sbjct: 819 PGTTRPGPPPVSQGQRLSPGSYPTVIQQQNATSQRAAKNGPPVSDQ-KEVLPAG 871
>gi|54607089 semaphorin 3B isoform 2 precursor [Homo sapiens]
Length = 748
Score = 37.0 bits (84), Expect = 0.023
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 80 RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139
RR S +L A++Q ++PLR + A A L A A GP L L
Sbjct: 635 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 692
Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195
+ GG S + R+ R QP L+ P S + G R H P PRA
Sbjct: 693 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 738
>gi|4759092 semaphorin 3B isoform 1 precursor [Homo sapiens]
Length = 749
Score = 37.0 bits (84), Expect = 0.023
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 80 RRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSL 139
RR S +L A++Q ++PLR + A A L A A GP L L
Sbjct: 636 RRDSGVYLCAAVEQGFTQPLRRLSLHVLSATQA--ERLARAEEAAPAAPPGPKLWYRDFL 693
Query: 140 RGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRA 195
+ GG S + R+ R QP L+ P S + G R H P PRA
Sbjct: 694 QLVEPGGGGSANSLRMCRPQPALQSLPLESRRK----------GRNRRTHAPEPRA 739
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 36.6 bits (83), Expect = 0.030
Identities = 37/135 (27%), Positives = 43/135 (31%), Gaps = 25/135 (18%)
Query: 59 PSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLG 118
PS+ P L+G PRP P + LR P P A P
Sbjct: 670 PSSGPPPAPPLSPALSGLPRPASPYGS-------------LRRHPPPWAAPAHVPPAPQA 716
Query: 119 AGWGACRPALYGPS-----LCAP---PSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSS 170
+ W P P L P PS RGS G G PRA W P S
Sbjct: 717 SWWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSRRRGAAFGFPGASPRASRRRAWSPLASP 776
Query: 171 EQEAQGGWSVGPGLG 185
+ + PGLG
Sbjct: 777 QPSLRS----SPGLG 787
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 36.6 bits (83), Expect = 0.030
Identities = 62/229 (27%), Positives = 78/229 (34%), Gaps = 30/229 (13%)
Query: 10 PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
PGA+ A G G G G R G+ R R C P C S+
Sbjct: 84 PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139
Query: 68 HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
H P L G R S L+ + RP PA PA L + AG A R
Sbjct: 140 HRWPQLRGREADPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190
Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
P LC+ G+A G R TR PP P S +GG V G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239
Query: 188 HHGPRPRA----IWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN 232
G R A W + + +GG+ L EV+ ++ N
Sbjct: 240 GAGGRGGAQRIPPWPLRRLSLQYLGGVSEYSNKQELEQEVIVGKMLRNN 288
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 36.2 bits (82), Expect = 0.040
Identities = 57/216 (26%), Positives = 71/216 (32%), Gaps = 40/216 (18%)
Query: 39 GAPWRR---PCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPR---PRRPSRTFLLTALK 92
G P RR PCP R+ C P + GD W G P P P L A +
Sbjct: 688 GGPSRRGPLPCPLCSREGACSCLP---LERGDAVAGW-GGHPALGCPHPPEDDSSLRAER 743
Query: 93 QRHSEPLRERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSC 152
++ +P AP A P L GA P P PP+
Sbjct: 744 GSLAD------LPMAPPASAPPEFLDPLMGAAAPQY--PGRGPPPA-------------- 781
Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFEVVGGLFV 212
P PP PA + PG G GP+P + + F G
Sbjct: 782 ---PPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPEGAFPG 838
Query: 213 RQAALALGLEVVFTALMPLNLFPGDPGSIRPGPEPG 248
AA G+ P P DPG+ RP P+PG
Sbjct: 839 GGAAEEEGVP---RPRAPPE--PPDPGAPRPPPDPG 869
>gi|8924248 SRY-box 18 [Homo sapiens]
Length = 384
Score = 36.2 bits (82), Expect = 0.040
Identities = 73/291 (25%), Positives = 101/291 (34%), Gaps = 38/291 (13%)
Query: 10 PGASSTCAWGLGSCAG---RGLGVRTASVRTVGAPWRRPCPRTC---RQDPWRCHPSASV 63
P A CAW G A RGL A++ AP P P+ +P R S +
Sbjct: 14 PPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLSPAG 73
Query: 64 RVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGA 123
R G+ A E R RRP F++ A +R + + A L +LG W
Sbjct: 74 R-GER---QAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNA----VLSKMLGKAWKE 125
Query: 124 CRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVG-- 181
A P + LR + R P +++P + G
Sbjct: 126 LNAAEKRPFVEEAERLR------------VQHLRDHPNYKYRPRRKKQARKARRLEPGLL 173
Query: 182 -PGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLN-LFPGDPG 239
PGL P P + SA AF + L A GL + PL+ L PG+
Sbjct: 174 LPGLAPPQPPPEPFPAASGSARAFRELPPL----GAEFDGLGLPTPERSPLDGLEPGEAA 229
Query: 240 SIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPA 290
P P A R + P E+ + G C + P +A R PA
Sbjct: 230 FFPPPAAPEDCALRPFRAPYAP-TELSRDPGGCYGA---PLAEALRTAPPA 276
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.8 bits (81), Expect = 0.052
Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAP-PAGQAGREVGPAGHD 293
PG PG PG S +G G E G+ S P P G G GPAG D
Sbjct: 179 PGPPGPPGTSGHPGSPGSPGYQGPPG-------EPGQAGPSGPPGPPGAIGPS-GPAGKD 230
Query: 294 HRVGKPEDGKERALRAP--VRGP 314
G+P ER L P ++GP
Sbjct: 231 GESGRPGRPGERGLPGPPGIKGP 253
Score = 28.5 bits (62), Expect = 8.3
Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 236 GDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAA------PPAGQAGREVGP 289
G+ G P PG SR G GP + + ETGE A+ P A GP
Sbjct: 1065 GESGPAGPAGAPGPAGSRGAPGPQGPRGD-KGETGERGAAGIKGHRGFPGNPGAPGSPGP 1123
Query: 290 AGHDHRVGKPEDGKERALRAPVRGP 314
AG +G P R P P
Sbjct: 1124 AGQQGAIGSPGPAGPRGPVGPSGPP 1148
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 35.8 bits (81), Expect = 0.052
Identities = 41/118 (34%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 11 GASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPS-ASVRVGDHF 69
GA+S + G GS AGRG TAS V R P PR R W S S R
Sbjct: 72 GAASDGSRGPGSPAGRGRPEATASATLV----RSPGPR--RSSAWAEGGSPRSTRS---- 121
Query: 70 LPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
L G+PR R P + R P+R +P+P A GA A RPA
Sbjct: 122 ---LLGDPRLRSPGS----KGAESRLRSPVRAKPIPGQKTSEA-DDAAGAAAAAARPA 171
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.4 bits (80), Expect = 0.068
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 234 FPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGRE-----VG 288
FPG PG P EPG Q + G GP V P PAG+ GRE G
Sbjct: 994 FPGLPG---PSGEPGKQGAPGASGDRGPPGPVGP------PGLTGPAGEPGREGSPGADG 1044
Query: 289 PAGHDHRVG-KPEDGKERALRAP 310
P G D G K + G+ A+ AP
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAP 1067
Score = 34.3 bits (77), Expect = 0.15
Identities = 65/231 (28%), Positives = 75/231 (32%), Gaps = 45/231 (19%)
Query: 101 ERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQ- 159
ER P P PG GA + GP PP L G A + GR GS P A
Sbjct: 991 ERGFPGLPGPSGEPGKQGAPGASGDRGPPGP--VGPPGLTGPAGEPGREGS----PGADG 1044
Query: 160 PPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFE--VVGGLFVRQAAL 217
PP R AG + G PG P P E G + A
Sbjct: 1045 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1104
Query: 218 ALGLEVV-----------------------FTALMPLNLFPGDPGSIRPGPEPGCQASRV 254
A G++ FT L L PG PG P + G
Sbjct: 1105 ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL---PGPPG---PSGDQGASGPAG 1158
Query: 255 IKGGLGPFIEVEPETGECSASAAP----PAGQAGR--EVGPAGHDHRVGKP 299
G GP V P +G+ A+ P P G GR E GPAG G P
Sbjct: 1159 PSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1208
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 236 GDPGSIRPGPEPGCQASRVIKG--GLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293
G PG P EPG + S G G V+ + GE A AP A GPAG
Sbjct: 1023 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-- 1080
Query: 294 HRVGKPEDGKERALRAPVRGP 314
GK D E + P+ GP
Sbjct: 1081 -PTGKQGDRGEAGAQGPM-GP 1099
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.4 bits (80), Expect = 0.068
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 15/83 (18%)
Query: 234 FPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGRE-----VG 288
FPG PG P EPG Q + G GP V P PAG+ GRE G
Sbjct: 925 FPGLPG---PSGEPGKQGAPGASGDRGPPGPVGP------PGLTGPAGEPGREGSPGADG 975
Query: 289 PAGHDHRVG-KPEDGKERALRAP 310
P G D G K + G+ A+ AP
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAP 998
Score = 34.3 bits (77), Expect = 0.15
Identities = 65/231 (28%), Positives = 75/231 (32%), Gaps = 45/231 (19%)
Query: 101 ERPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQ- 159
ER P P PG GA + GP PP L G A + GR GS P A
Sbjct: 922 ERGFPGLPGPSGEPGKQGAPGASGDRGPPGP--VGPPGLTGPAGEPGREGS----PGADG 975
Query: 160 PPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPRAIWTASASAFE--VVGGLFVRQAAL 217
PP R AG + G PG P P E G + A
Sbjct: 976 PPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAG 1035
Query: 218 ALGLEVV-----------------------FTALMPLNLFPGDPGSIRPGPEPGCQASRV 254
A G++ FT L L PG PG P + G
Sbjct: 1036 ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGL---PGPPG---PSGDQGASGPAG 1089
Query: 255 IKGGLGPFIEVEPETGECSASAAP----PAGQAGR--EVGPAGHDHRVGKP 299
G GP V P +G+ A+ P P G GR E GPAG G P
Sbjct: 1090 PSGPRGPPGPVGP-SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPP 1139
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 236 GDPGSIRPGPEPGCQASRVIKG--GLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293
G PG P EPG + S G G V+ + GE A AP A GPAG
Sbjct: 954 GPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG-- 1011
Query: 294 HRVGKPEDGKERALRAPVRGP 314
GK D E + P+ GP
Sbjct: 1012 -PTGKQGDRGEAGAQGPM-GP 1030
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.088
Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%)
Query: 10 PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
PGA+ A G G G G R G+ R R C P C S+
Sbjct: 84 PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139
Query: 68 HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
H P L G R S L+ + RP PA PA L + AG A R
Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190
Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
P LC+ G+A G R TR PP P S +GG V G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239
Query: 188 HHGPR 192
G R
Sbjct: 240 GAGGR 244
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.088
Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 26/185 (14%)
Query: 10 PGASSTCAWGLGSCAGRGLGVRTASVR--TVGAPWRRPCPRTCRQDPWRCHPSASVRVGD 67
PGA+ A G G G G R G+ R R C P C S+
Sbjct: 84 PGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRGCHS-PSCCRSSSCAW--- 139
Query: 68 HFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWGACRPA 127
H P L G R S L+ + RP PA PA L + AG A R
Sbjct: 140 HRWPQLRGREAEPRASPALLIC---------IAPRPRPALPAALHIGARATAGLAAKRAQ 190
Query: 128 LYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGER 187
P LC+ G+A G R TR PP P S +GG V G R
Sbjct: 191 ---PQLCS----AGTAARGRR----TRASPPTPPRPRPPGLRSGDVPRGGARVERPTGRR 239
Query: 188 HHGPR 192
G R
Sbjct: 240 GAGGR 244
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 35.0 bits (79), Expect = 0.088
Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 3 SQKMRTQPGASSTCAWGLGSCAGRGLGVRTASVRTVGAPWRRPCPRTCRQDPWRCHPSAS 62
S RT P S T + G V + +R AP R P P + + P P+
Sbjct: 1038 SSSPRTSPCQSPTISEG---------PVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATP 1088
Query: 63 VRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRERPVPAAPACLALPGLLGAGWG 122
+ D P P P RP A QR P R P+ A LA PG AG+
Sbjct: 1089 LPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPP-SGRSQPSPQAGLAGPG--PAGYS 1145
Query: 123 ACRPAL 128
RP +
Sbjct: 1146 TARPTI 1151
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 34.7 bits (78), Expect = 0.12
Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 99 LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152
LR P P P L G G GA P GPSL P + R S R SC
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180
Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
P A+P + G + Q + G W PG P PR
Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 34.7 bits (78), Expect = 0.12
Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 99 LRERPVPAAPAC-LALPGLLGAG----WGACRPALYGPSLCAPPSLRGSAEDGGRSGSC- 152
LR P P P L G G GA P GPSL P + R S R SC
Sbjct: 121 LRASPAPRGPCGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSAPRCASCP 180
Query: 153 TRLPRAQPPLRWQPAGSSEQEAQGGWSVGPGLGERHHGPRPR 194
P A+P + G + Q + G W PG P PR
Sbjct: 181 PHAPLARPSAVAEGPGLA-QASGGSWRRCPGASSAGPPPWPR 221
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 34.7 bits (78), Expect = 0.12
Identities = 58/213 (27%), Positives = 72/213 (33%), Gaps = 47/213 (22%)
Query: 133 LCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQGGWSVGP-GLGERHHGP 191
L A +LR G G R PR P PA + GG G GL GP
Sbjct: 14 LLAGLALRELEPGCGSPGRGRRGPRPGPGDEAAPALGRRGKGSGGPEAGADGLSRGERGP 73
Query: 192 RPRAIWTASASAFEVV-----------GGLFVRQAALALGLEVVFTALMPLNLFPGDPGS 240
R A+ SA GG R + ++LG + G P S
Sbjct: 74 RRAAVPELSAQPAGSPRASLAGSDGGGGGGSARSSGISLGYDQRH----------GSPRS 123
Query: 241 IRPGPEPG-----------CQASRVIKGGLGPFIEVEPETGECSASAAPP--AGQA---- 283
R P PG +S +G G + + P G C A A P AG A
Sbjct: 124 GRSDPRPGPGPPSVGSARSSVSSLGSRGSAGAYADFLPP-GACPAPARSPEPAGPAPFPL 182
Query: 284 -------GREVGPAGHDHRVGKPEDGKERALRA 309
GRE GP+ + R+ ERAL A
Sbjct: 183 PALPLPPGREGGPSAAERRLEALTRELERALEA 215
>gi|239754965 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 34.3 bits (77), Expect = 0.15
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 42 WRRPCPRTCRQDPWRCHPSASVRVGDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEPLRE 101
+R P TC PW P S++V D PWL +PR R L+ + S +
Sbjct: 65 FRPPQLLTCLGGPWCLCPLCSLQVED---PWLFSLLQPRDQLR------LENQESCCVCG 115
Query: 102 RPVPAAPACLALPGLLGAGWGACRPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPP 161
R +AP +A A G C L + +PP R +A +GG + P AQ P
Sbjct: 116 REDNSAPDTVA------ATSGVC-GELRDSAKRSPP--RAAAGEGGWARP-PPTPGAQGP 165
Query: 162 LR------WQPAGSSEQEAQGG 177
+ W+P G + A+GG
Sbjct: 166 AKPPRFPAWRPGGRGDPNAEGG 187
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 34.3 bits (77), Expect = 0.15
Identities = 70/236 (29%), Positives = 81/236 (34%), Gaps = 37/236 (15%)
Query: 66 GDHFLPWLAGEPRPRRPSRTFLLTALKQRHSEP-LRERPVPAAPACLALPGLLGAGWGAC 124
G LP G P P L L + +P LR P PA P PGL+G
Sbjct: 1192 GPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGP-----PGLMGP----- 1241
Query: 125 RPALYGPSLCAPPSLRGSAEDGGRSGSCTRLPRAQPPLRWQPAGSSEQEAQG--GWSVGP 182
P G + P L G D G+ G P +P E A G G P
Sbjct: 1242 -PGFKGKT--GHPGLPGPKGDCGKPGP--------PGSTGRPGAEGEPGAMGPQGRPGPP 1290
Query: 183 GLGERHHGPRPRAIWTASASAFEVVGGLFVRQAALALGLEVVFTALMPLNLFPGDPGSIR 242
G H GP P + VG R A GL A +P PG PG
Sbjct: 1291 G----HVGP-PGPPGQPGPAGISAVGLKGDRGATGERGL-----AGLPGQ--PGPPGHPG 1338
Query: 243 PGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK 298
P EPG + +G G P + AA GQAG E G AG GK
Sbjct: 1339 PPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAG-EKGRAGMPGGPGK 1393
Score = 31.2 bits (69), Expect = 1.3
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 235 PGDPGSIRPGP--EPGCQASRVIKGGLGPFIEVEPETGECSASAAP-------PAGQAGR 285
PG PG GP EPG I+G GP P TGE A +P P G G
Sbjct: 782 PGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGP-TGEKGAQGSPGVKGATGPVGPPGA 840
Query: 286 EV-GPAGHDHRVGK 298
V GP G D + G+
Sbjct: 841 SVSGPPGRDGQQGQ 854
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDH 294
PG PG+ P PG + R G G E P E PAG G E GP G+
Sbjct: 1089 PGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRG-ERGPQGNSG 1147
Query: 295 RVG 297
G
Sbjct: 1148 EKG 1150
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 235 PGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGR--EVGPAGH 292
PGDPG+ PG ++G GP E C + AGR + GP G
Sbjct: 690 PGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE 749
Query: 293 DHRVGKPEDGKERALRAP-VRGP 314
G GK P V+GP
Sbjct: 750 QGPEGVGRPGKPGQPGLPGVQGP 772
Score = 29.3 bits (64), Expect = 4.9
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 14/70 (20%)
Query: 235 PGDPGSI-RPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHD 293
PG PG + PGP PG QA + +G GP S PP G G + GPAG D
Sbjct: 1167 PGFPGKVGSPGP-PGPQAEKGSEGIRGP--------SGLPGSPGPP-GPPGIQ-GPAGLD 1215
Query: 294 HRVGKPEDGK 303
GK DGK
Sbjct: 1216 GLDGK--DGK 1223
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 33.9 bits (76), Expect = 0.20
Identities = 56/213 (26%), Positives = 73/213 (34%), Gaps = 14/213 (6%)
Query: 101 ERPVPAAPACLALPGLLGAGWGACRPALYGP-SLCAPPSLRGSAEDGGRSGSCTRLPRAQ 159
ER +P + PG LG A P GP P + G+ + GR G+
Sbjct: 881 ERGLPGVAGAVGEPGPLGI---AGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGN---DG 934
Query: 160 PPLR-WQPAGSSEQEAQGGWS-VGPGLGERHHGPRPRAIWTASASAFEVVGGLFVRQAAL 217
PP R QP E+ G VG HGP A + G + A
Sbjct: 935 PPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVG 994
Query: 218 ALGLEVVFTALMPLNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAA 277
G + + G+PG P PG + ++G G + S A
Sbjct: 995 PRGP----SGPQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPA 1050
Query: 278 PPAGQAGREVGPAGHDHRVGKPEDGKERALRAP 310
P G AG GPAG D R G P +R P
Sbjct: 1051 GPRGPAGPS-GPAGKDGRTGHPGTVGPAGIRGP 1082
Score = 32.0 bits (71), Expect = 0.75
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 231 LNLFPGDPGSIRPGPEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPA 290
+ L PG G + P PG + +G GP E A A PAG G+ A
Sbjct: 86 VGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGK----A 141
Query: 291 GHDHRVGKPEDGKERALRAP 310
G D GKP ER + P
Sbjct: 142 GEDGHPGKPGRPGERGVVGP 161
>gi|226823326 methenyltetrahydrofolate synthetase domain containing
isoform 5 [Homo sapiens]
Length = 363
Score = 33.5 bits (75), Expect = 0.26
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303
PEPGCQ + + G P PET A+ P G E P D VG P D +
Sbjct: 243 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 298
Query: 304 ----ERALR----APVRGPWLRP 318
+RALR P+R W P
Sbjct: 299 VSDLKRALRELGSVPLRLTWQGP 321
>gi|226823324 methenyltetrahydrofolate synthetase domain containing
isoform 4 [Homo sapiens]
Length = 382
Score = 33.5 bits (75), Expect = 0.26
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 245 PEPGCQASRVIKGGLGPFIEVEPETGECSASAAPPAGQAGREVGPAGHDHRVGK-PEDGK 303
PEPGCQ + + G P PET A+ P G E P D VG P D +
Sbjct: 262 PEPGCQQTVPLSVGRRPPDTPGPETNSMEAAPGSPPG----EGAPLAADVYVGNLPGDAR 317
Query: 304 ----ERALR----APVRGPWLRP 318
+RALR P+R W P
Sbjct: 318 VSDLKRALRELGSVPLRLTWQGP 340
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,060,374
Number of Sequences: 37866
Number of extensions: 1066026
Number of successful extensions: 4670
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 218
Number of HSP's that attempted gapping in prelim test: 4391
Number of HSP's gapped (non-prelim): 548
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.