Guide to the Human Genome
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Name: LOC100290675 Sequence: fasta or formatted (287aa) NCBI GI: 239748022
Description:

PREDICTED: hypothetical protein XP_002346495

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         31           2
 C cysteine            3.5         10           1
 D aspartate           1.7          5           1
 E glutamate           4.9         14           1
 F phenylalanine       2.8          8           1
 G glycine            12.9         37           2
 H histidine           1.7          5           2
 I isoleucine          1.4          4           1
 K lysine              1.4          4           1
 L leucine             9.8         28           2
 M methionine          1.0          3           1
 N asparagine          0.3          1           1
 P proline            12.9         37           2
 Q glutamine           3.5         10           1
 R arginine           11.8         34           2
 S serine              7.3         21           2
 T threonine           3.5         10           1
 V valine              5.2         15           2
 W tryptophan          3.1          9           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346495 
LOC100291672          0.971   PREDICTED: hypothetical protein XP_002345662 
LOC100287387          0.971   PREDICTED: hypothetical protein XP_002342351 
TAF4                  0.021   TBP-associated factor 4 
SEMA3B                0.021   semaphorin 3B isoform 2 precursor 
SEMA3B                0.021   semaphorin 3B isoform 1 precursor 
MYO15A                0.021   myosin XV 
LOC100293975          0.021   PREDICTED: hypothetical protein 
LMTK3                 0.019   lemur tyrosine kinase 3 
JMY                   0.019   junction-mediating and regulatory protein 
LOC100290812          0.017   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.017   PREDICTED: hypothetical protein XP_002343496 
SYNJ1                 0.017   synaptojanin 1 isoform d 
BHLHA9                0.017   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.017   PREDICTED: basic helix-loop-helix family, member a9...
LOC100292240          0.015   PREDICTED: hypothetical protein 
SRCAP                 0.014   Snf2-related CBP activator protein 
NOTCH3                0.014   Notch homolog 3 
SORCS2                0.014   VPS10 domain receptor protein SORCS 2 
MAP3K13               0.014   mitogen-activated protein kinase kinase kinase 13 [Ho...
FAM123C               0.014   hypothetical protein LOC205147 
FAM123C               0.014   hypothetical protein LOC205147 
FAM123C               0.014   hypothetical protein LOC205147 
FAM123C               0.014   hypothetical protein LOC205147 
C17orf65              0.014   hypothetical protein LOC339201 
SHC2                  0.014   SHC (Src homology 2 domain containing) transforming...
LEMD3                 0.012   LEM domain containing 3 
LOC339742             0.012   PREDICTED: hypothetical protein 
LOC100127891          0.012   PREDICTED: similar to hCG2042508 
LOC100127891          0.012   PREDICTED: similar to hCG2042508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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