Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239753428

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753428 PREDICTED: hypothetical protein [Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753428 PREDICTED: hypothetical protein [Homo sapiens]           244   8e-66
gi|239747997 PREDICTED: hypothetical protein [Homo sapiens]           244   8e-66
gi|23510368 homeobox D11 [Homo sapiens]                                36   0.006
gi|109452587 family with sequence similarity 98, member B isofor...    36   0.007
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|169166135 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]            35   0.010
gi|150378478 PR domain containing 8 [Homo sapiens]                     35   0.010
gi|150378439 PR domain containing 8 [Homo sapiens]                     35   0.010
gi|44921615 exocyst complex 84-kDa subunit [Homo sapiens]              35   0.010
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ...    35   0.013
gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo ...    35   0.013
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               35   0.013
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]        35   0.013
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]        35   0.013
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ...    35   0.017
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ...    35   0.017
gi|182507165 thymus expressed gene 3-like [Homo sapiens]               35   0.017
gi|116642878 hypothetical protein LOC400223 [Homo sapiens]             34   0.022
gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo ...    34   0.028
gi|206597556 kelch domain containing 7B [Homo sapiens]                 34   0.028
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo ...    33   0.037
gi|87252717 hypothetical protein LOC284618 [Homo sapiens]              33   0.037
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]            33   0.048
gi|153792074 proline rich 12 [Homo sapiens]                            33   0.048
gi|71274172 ankyrin repeat domain 56 [Homo sapiens]                    33   0.048

>gi|239753428 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  244 bits (624), Expect = 8e-66
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS 60
           MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS
Sbjct: 1   MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS 60

Query: 61  LGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA 117
           LGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA
Sbjct: 61  LGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA 117


>gi|239747997 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  244 bits (624), Expect = 8e-66
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS 60
           MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS
Sbjct: 1   MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS 60

Query: 61  LGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA 117
           LGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA
Sbjct: 61  LGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA 117


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 22  GPRPRSPLPPRCQVARGSQEEGRER-GTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSGS 80
           GP+P  P PP      G+ ++G  R G GGGG S     + G   + AA   GG      
Sbjct: 192 GPQP--PPPPAPPQPEGAADKGDPRTGAGGGGGSPCTKATPGSEPKGAAEGSGGDGEGPP 249

Query: 81  GETPAASAASLLLRQRLR 98
           GE  A  ++S +  QR R
Sbjct: 250 GEAGAEKSSSAVAPQRSR 267



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 19/131 (14%)

Query: 2   PLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSL 61
           P D  S  +  ++PS   +  P   S L P  Q  R  +   R+ G     W +R     
Sbjct: 25  PSDFASKPSFLSQPSSCQMTFPYS-SNLAPHVQPVR--EVAFRDYGLERAKWPYRGGGGG 81

Query: 62  GQAGRRAAGWGGGREGSGSG------------ETPAASAASLLLRQRLRPD----PLRLC 105
           G AG  ++G G G  G G+G               AA+A    +++ L P     P  L 
Sbjct: 82  GSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLF 141

Query: 106 QAPARTCRVGG 116
           +AP   C   G
Sbjct: 142 KAPEPVCAAPG 152


>gi|109452587 family with sequence similarity 98, member B isoform 1
           [Homo sapiens]
          Length = 433

 Score = 35.8 bits (81), Expect = 0.007
 Identities = 27/64 (42%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 21  RGPRPRS--PLPPRCQVARGSQEEGRERGT-GGGGWSHRRVLSLGQAGRRAAGWGGGREG 77
           RG RP    P PP     +  QE G  RG  GGGG    R    G  GR   G GGG  G
Sbjct: 308 RGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWG 367

Query: 78  SGSG 81
            G G
Sbjct: 368 GGGG 371



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 8/35 (22%)

Query: 47  GTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSGSG 81
           G GGGGW        G  G    GWGGG  G   G
Sbjct: 360 GGGGGGW--------GGGGGGGGGWGGGGGGGRGG 386


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 8   PTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRR 67
           P   R RP+    +     +PL  R +  R     GR    GG GWSH     +G  G  
Sbjct: 119 PAPRRPRPAPGRRKSLYEAAPLLTREKGGRS----GRRGDRGGSGWSHGHTARVGGTGDS 174

Query: 68  AAGW----GGGREG-SGSGETPAASAASLLLRQRLRPDP 101
           +AG     G  R G SG  E P        L++   P P
Sbjct: 175 SAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP 213


>gi|169166135 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 8   PTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSH--RRVLSLGQAG 65
           P    A P  A LR P    PL        G  E G  R +GGGGWS      ++ G+  
Sbjct: 14  PGRGSAGPPGAALREPEALPPL--------GGLEHGPLRPSGGGGWSEDDAEDVTAGRCF 65

Query: 66  RRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLR 103
              A W G     G+   PA  A    L  RL   P R
Sbjct: 66  LTGAFWTG---VLGTSPAPALGAGPCALGARLPRCPSR 100


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 30/99 (30%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 8   PTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRR 67
           P   R RP+    +     +PL  R +  R     GR    GG GWSH     +G  G  
Sbjct: 119 PAPRRPRPAPGRRKSLYEAAPLLTREKGGRS----GRRGDRGGSGWSHGHTARVGGTGDS 174

Query: 68  AAGW----GGGREG-SGSGETPAASAASLLLRQRLRPDP 101
           +AG     G  R G SG  E P        L++   P P
Sbjct: 175 SAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAP 213


>gi|169165327 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 8   PTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSH--RRVLSLGQAG 65
           P    A P  A LR P    PL        G  E G  R +GGGGWS      ++ G+  
Sbjct: 14  PGRGSAGPPGAALREPEALPPL--------GGLEHGPLRPSGGGGWSEDDAEDVTAGRCF 65

Query: 66  RRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPLR 103
              A W G     G+   PA  A    L  RL   P R
Sbjct: 66  LTGAFWTG---VLGTSPAPALGAGPCALGARLPRCPSR 100


>gi|150378478 PR domain containing 8 [Homo sapiens]
          Length = 689

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 19/89 (21%)

Query: 7   SPTAARARPSEA-CLRGPRPRSPLPPRCQ---VARGSQ-----EEGRERGTGGGGWSHRR 57
           S T A A P  A  L  PRP  PLP R +    ARGS      + G    T GGG +   
Sbjct: 422 SSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGT--- 478

Query: 58  VLSLGQAGRRAAGWGGGREGSGSGETPAA 86
                  G  AAG  GG +G+ S E  +A
Sbjct: 479 -------GAGAAGGAGGGQGAASDERKSA 500


>gi|150378439 PR domain containing 8 [Homo sapiens]
          Length = 689

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 19/89 (21%)

Query: 7   SPTAARARPSEA-CLRGPRPRSPLPPRCQ---VARGSQ-----EEGRERGTGGGGWSHRR 57
           S T A A P  A  L  PRP  PLP R +    ARGS      + G    T GGG +   
Sbjct: 422 SSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGT--- 478

Query: 58  VLSLGQAGRRAAGWGGGREGSGSGETPAA 86
                  G  AAG  GG +G+ S E  +A
Sbjct: 479 -------GAGAAGGAGGGQGAASDERKSA 500


>gi|44921615 exocyst complex 84-kDa subunit [Homo sapiens]
          Length = 725

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 29  LPPRCQVARGSQEEGRERGTGG-GGWSHRRVLSLGQAGRRAAGWGGGREGSGSGETPAAS 87
           L P    A  +   G E G GG GG  H R    GQAG  +   G  R+GSG GE     
Sbjct: 105 LLPAAAAAGAAAASGGEEGVGGAGGRDHLR----GQAGFFSTPGGASRDGSGPGEEGKQR 160

Query: 88  AASLLLRQ 95
             + LL +
Sbjct: 161 TLTTLLEK 168


>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
           sapiens]
          Length = 201

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 37/110 (33%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 1   MPLDPESPTAARARPSEACL---RGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRR 57
           +P      TA RA    A L   R PR   PL PR    RG          G GG     
Sbjct: 66  LPNTAAEATAKRAPVPSAPLPAARSPRGPQPLSPRSSWVRGM--------PGRGGHQRPL 117

Query: 58  VLSLGQA-----GRRAAGWGGGREGSGSGETPAASAASLLLRQRLRPDPL 102
             +LG       GR  AG GG      S   P A A +L  R+R RP  L
Sbjct: 118 FSTLGAGFQPPLGRGGAGRGGAPASLASSARPCA-APALPYRERARPAAL 166


>gi|239748281 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 242

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 20  LRGPRPRSPLPPRCQVARGSQEEGRERGTGGG-----GWSHRRVLSLGQAGRRAAGWGGG 74
           LR PR      PR +  RG Q++ RE+  GG      G   R+ L  G  GRR  G    
Sbjct: 118 LRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPD 177

Query: 75  REGSGSGETPA 85
           R G G+G   A
Sbjct: 178 RHGLGAGSAGA 188


>gi|239742182 PREDICTED: hypothetical protein XP_002342446 [Homo
           sapiens]
          Length = 242

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 20  LRGPRPRSPLPPRCQVARGSQEEGRERGTGGG-----GWSHRRVLSLGQAGRRAAGWGGG 74
           LR PR      PR +  RG Q++ RE+  GG      G   R+ L  G  GRR  G    
Sbjct: 118 LRLPRVVGVPGPRGRRHRGEQQQQREQRGGGARAPGPGPGSRQPLPAGLHGRRKVGSAPD 177

Query: 75  REGSGSGETPA 85
           R G G+G   A
Sbjct: 178 RHGLGAGSAGA 188


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 26  RSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRRAA--------GWGGGREG 77
           + P+P R +         + RG+G GG  HR     G A  RA+          GGGR G
Sbjct: 46  KHPVPARAR--------DKPRGSGSGGGGHRDGRGTGDANHRASSGRSSGSGAGGGGRGG 97

Query: 78  SGSGETPAASAAS 90
             SG+ P AS  S
Sbjct: 98  KASGD-PGASGMS 109


>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
          Length = 758

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 22  GPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGS--- 78
           G R RSP  P+     GS +         G W+ RR        RRA  W      S   
Sbjct: 68  GMRSRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRR--------RRARSWSPSSSASSSA 119

Query: 79  --GSGETPAASAASLLLRQRLRPDPLRL 104
             G  ++P A+AA+L  +Q L+ + LRL
Sbjct: 120 SPGRSQSPRAAAAALSQQQSLQ-ERLRL 146


>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
          Length = 758

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 22  GPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGS--- 78
           G R RSP  P+     GS +         G W+ RR        RRA  W      S   
Sbjct: 68  GMRSRSPPRPKWHSRDGSSQSDSGEEQSRGQWARRR--------RRARSWSPSSSASSSA 119

Query: 79  --GSGETPAASAASLLLRQRLRPDPLRL 104
             G  ++P A+AA+L  +Q L+ + LRL
Sbjct: 120 SPGRSQSPRAAAAALSQQQSLQ-ERLRL 146


>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
           sapiens]
          Length = 368

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/77 (38%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 23  PRPRSPLPPRCQVARGSQEEGR-------ERGTGGGGWSHRRVL--SLGQAGRRAAGWGG 73
           P    P PPR Q ARGS+   R         G  GG    R  L  S  +A   AA    
Sbjct: 286 PAQGPPAPPRPQKARGSRSRRRYLWRWDSAAGVAGGA---RAALSSSAAEAAAAAAAAAA 342

Query: 74  GREGSGSGETPAASAAS 90
            R    SG +PAASAAS
Sbjct: 343 ARMDFLSGPSPAASAAS 359


>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 1  MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS 60
          MP   +    +   P   C+RG + R P PP  +  RG +  G     GGGG   RR   
Sbjct: 1  MPFSFQVQHPSLCTPRVQCIRGSQ-RVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARG 59

Query: 61 LG---QAGRRAAGWGGGREG-----SGSGETPAA 86
           G   +A + A  +G G  G     SG G  P A
Sbjct: 60 GGCWARAYQDARCFGRGEGGDLQVSSGPGAAPPA 93


>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
          sapiens]
          Length = 255

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 1  MPLDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLS 60
          MP   +    +   P   C+RG + R P PP  +  RG +  G     GGGG   RR   
Sbjct: 1  MPFSFQVQHPSLCTPRVQCIRGSQ-RVPQPPAARSPRGPRAGGGGGDAGGGGAPVRRARG 59

Query: 61 LG---QAGRRAAGWGGGREG-----SGSGETPAA 86
           G   +A + A  +G G  G     SG G  P A
Sbjct: 60 GGCWARAYQDARCFGRGEGGDLQVSSGPGAAPPA 93


>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
          Length = 629

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 3   LDPESPTAARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLG 62
           +D       R R   A + GP P SP  P+ ++  G      E   G  G   RR    G
Sbjct: 482 IDAADGRRVRPRAPAARVPGPGP-SPSAPQRRLLYGCAGSDSECSAGRLGPLGRR----G 536

Query: 63  QAGRRAAGWGGGREGSGSGETPAASAAS 90
            AG    G+G     +  GE+PA S+AS
Sbjct: 537 PAGGVGGGYGESESSASEGESPAFSSAS 564


>gi|116642878 hypothetical protein LOC400223 [Homo sapiens]
          Length = 166

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 8/73 (10%)

Query: 42  EGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSG--------SGETPAASAASLLL 93
           EG E G G    +HR  +  G AG  AA  G  R  SG        +G+  A  A++ L 
Sbjct: 51  EGPEVGPGTEEPAHRLPVGSGSAGEAAASLGTARVRSGRAECTAKLAGDGHARLASAFLH 110

Query: 94  RQRLRPDPLRLCQ 106
           R+   P PL  C+
Sbjct: 111 RRAALPPPLGTCR 123


>gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo
           sapiens]
          Length = 233

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 39/123 (31%), Positives = 50/123 (40%), Gaps = 22/123 (17%)

Query: 2   PLDPE-SPTAARA------RPSEACLRG------PRPRSPLPPRCQVARGSQ------EE 42
           P +P+ SP+ +RA      R +  C +       P P +PLPP     R SQ        
Sbjct: 86  PSEPQHSPSKSRALCNRGLRSTSRCTQQGLPSVPPSPLTPLPPSPTAPRRSQYPSPGSRV 145

Query: 43  GRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREG--SGSGETPAASAASLLLRQRLRPD 100
           GR  GTG G  +H RV    +   RA G  G   G  + S +T AA  A    R      
Sbjct: 146 GRGLGTGRGKLAH-RVAPSKEPPERACGSRGRSTGWAASSPKTHAAGQAPAAARSGRGAG 204

Query: 101 PLR 103
           P R
Sbjct: 205 PAR 207


>gi|206597556 kelch domain containing 7B [Homo sapiens]
          Length = 594

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 30/123 (24%)

Query: 1   MPLDPESPTAARARPSEACLRGPRPRSPLPP-----RCQVARGSQEE----------GRE 45
           MP  P  P A R  P  A     R   P+P      RC++A  S++E          G  
Sbjct: 100 MPRGPAQPPAQRP-PGPAASSSARRSQPVPQLRKRSRCEIAPSSEQEVRPAASGDPQGEA 158

Query: 46  RGTGGGGWSHRRVLSLGQAG--------RRAAGWG---GGREGSGSGETPAASAASLLLR 94
            G GG        L+  Q          +R  GWG   G R+ S     PA +AA   LR
Sbjct: 159 PGEGGSPAGRSGALTEKQEEARKLMVFLQRPGGWGVVEGPRKPSSRALEPATAAA---LR 215

Query: 95  QRL 97
           +RL
Sbjct: 216 RRL 218


>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 31 PRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSGSGETPAASAAS 90
          PR  V +  +EE +       G   RR    G AGRR  GWG      G+G+      AS
Sbjct: 12 PRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWG---PPGGAGDHQTLQRAS 68

Query: 91 LL 92
          LL
Sbjct: 69 LL 70


>gi|239741182 PREDICTED: hypothetical protein XP_002342129 [Homo
           sapiens]
          Length = 211

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 31/78 (39%), Positives = 34/78 (43%), Gaps = 10/78 (12%)

Query: 38  GSQEEGRERGTGGGGWSHRRVLSLGQAGRRAAGWGGGREGSGSGETPAASAASLLLRQRL 97
           G  +EG E GT GG  S  R L  G  G  A G GGGRE  G  E+P         R   
Sbjct: 5   GRTKEG-EPGTPGGAGSGGRSLRGGGGG--AGGGGGGREKRGRPESPRRR------RSGE 55

Query: 98  RPDPLRLCQAPARTCRVG 115
           R  P R  + P  T R G
Sbjct: 56  RASPARR-RGPGATTRPG 72


>gi|87252717 hypothetical protein LOC284618 [Homo sapiens]
          Length = 236

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 21  RGPRP----RSPLP---PRCQVARGSQEEGRERG-----TGGGGWSHRRVLSLGQAGRRA 68
           RGP P    RS LP   P  Q    SQ +G          GGGGW      SL    R+ 
Sbjct: 23  RGPGPEWTSRSLLPQSGPALQPTPYSQRKGPRETHPDALKGGGGWGWGNTQSLSGECRKG 82

Query: 69  AGWGGGREGSG-SGETPAASAASLLLRQRLRPDPLRLCQAP 108
            G G  ++G+  S  TP   AAS  L+    P PL     P
Sbjct: 83  VGAGEEKDGAAVSLSTPHLLAASAGLQP--APSPLGTAVCP 121


>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 334

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 18/108 (16%)

Query: 10  AARARPSEACLRGPRPRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQAGRRAA 69
           AA  R +E  LR   PR   PPR Q+ RG       RG  G       ++S G  GR   
Sbjct: 113 AAAVRDAERGLRREGPRRHAPPRKQL-RG------RRGAAG-------LVSAGHLGREPP 158

Query: 70  GWGGGREGSGSGETPAASAASLLLRQRLRPDPLRLCQAPARTCRVGGA 117
             GG R        P   A  LLL  R  P   R C    R   + GA
Sbjct: 159 RGGGPRP---PALVPVPLATPLLLEGRSEPS-TRACAVSGRQAALLGA 202


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 21  RGPRPRSPLPPRCQVARG---SQEEGRERGTGG-GGWSHRRVLSLGQAGRRAAGWG-GGR 75
           R P PRS   P+CQ   G   +   G+  G GG GG ++      G  G +A G G GG 
Sbjct: 405 RPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAYGQGFGGG 464

Query: 76  EGSGSGETPAASAASLLLRQRLRPDPLRLCQA 107
           +     + P+ S           P  L  CQ+
Sbjct: 465 QAQDLSKAPSYSGGPPQPPSGPPPPGLATCQS 496


>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
          Length = 793

 Score = 33.1 bits (74), Expect = 0.048
 Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 5   PESPTAARARPSEACLRGPR-PRSPLPPRCQVARGSQEEGRERGTGGGGWSHRRVLSLGQ 63
           P  P AA      A    PR  R   PP+ Q  R  +E+  E    G           G 
Sbjct: 89  PREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGL 148

Query: 64  AG---RRAAGWGGGREGSGSGETPAASAAS 90
            G   RRA G GGG +GS     P  +AA+
Sbjct: 149 PGSDSRRAPGKGGGSKGSPGQRPPVPAAAA 178


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,411,677
Number of Sequences: 37866
Number of extensions: 376722
Number of successful extensions: 3816
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 348
Number of HSP's that attempted gapping in prelim test: 2983
Number of HSP's gapped (non-prelim): 976
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press