Guide to the Human Genome
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Name: LOC100131009 Sequence: fasta or formatted (117aa) NCBI GI: 239753428
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {117aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         15           2
 C cysteine            3.4          4           1
 D aspartate           1.7          2           1
 E glutamate           6.0          7           2
 F phenylalanine       0.0          0           0
 G glycine            16.2         19           4
 H histidine           0.9          1           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             9.4         11           3
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline            11.1         13           2
 Q glutamine           4.3          5           1
 R arginine           17.1         20           2
 S serine              8.5         10           1
 T threonine           3.4          4           1
 V valine              2.6          3           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131009          1.000   PREDICTED: hypothetical protein 
HOXD11                0.050   homeobox D11 
FAM98B                0.050   family with sequence similarity 98, member B isofor...
LOC100131455          0.046   PREDICTED: hypothetical protein 
LOC100132663          0.046   PREDICTED: hypothetical protein 
LOC100131455          0.046   PREDICTED: hypothetical protein 
LOC100132663          0.046   PREDICTED: hypothetical protein 
PRDM8                 0.046   PR domain containing 8 
PRDM8                 0.046   PR domain containing 8 
EXOC8                 0.046   exocyst complex 84-kDa subunit 
LOC100289917          0.046   PREDICTED: hypothetical protein XP_002347096 
LOC100287290          0.046   PREDICTED: hypothetical protein 
LOC100287290          0.046   PREDICTED: hypothetical protein XP_002342446 
RBM15B                0.046   RNA binding motif protein 15B 
C19orf29              0.046   chromosome 19 open reading frame 29 
C19orf29              0.046   chromosome 19 open reading frame 29 
LOC100291609          0.046   PREDICTED: hypothetical protein XP_002346061 
LOC100287499          0.046   PREDICTED: hypothetical protein 
LOC100287499          0.046   PREDICTED: hypothetical protein XP_002343643 
DACT3                 0.046   thymus expressed gene 3-like 
C14orf181             0.041   hypothetical protein LOC400223 
LOC100288382          0.041   PREDICTED: hypothetical protein XP_002342213 
KLHDC7B               0.041   kelch domain containing 7B 
LOC646509             0.037   PREDICTED: hypothetical protein 
LOC100288548          0.037   PREDICTED: hypothetical protein XP_002342129 
C1orf104              0.037   hypothetical protein LOC284618 
LOC100293812          0.037   PREDICTED: hypothetical protein 
PRR12                 0.037   proline rich 12 
ANKRD56               0.037   ankyrin repeat domain 56 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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