Guide to the Human Genome
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Name: C14orf181 Sequence: fasta or formatted (166aa) NCBI GI: 116642878
Description:

hypothetical protein LOC400223

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         20           3
 C cysteine            1.2          2           1
 D aspartate           1.8          3           1
 E glutamate           4.8          8           2
 F phenylalanine       2.4          4           1
 G glycine            12.7         21           2
 H histidine           2.4          4           1
 I isoleucine          0.0          0           0
 K lysine              3.6          6           1
 L leucine            10.8         18           1
 M methionine          0.6          1           1
 N asparagine          1.8          3           1
 P proline            11.4         19           3
 Q glutamine           1.2          2           1
 R arginine           11.4         19           2
 S serine              9.6         16           1
 T threonine           8.4         14           3
 V valine              2.4          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400223 
CASKIN1               0.045   CASK interacting protein 1 
LOC643355             0.038   PREDICTED: hypothetical protein 
NKX1-1                0.035   PREDICTED: NK1 homeobox 1 
LOC100291627          0.032   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.032   PREDICTED: hypothetical protein XP_002348034 
LOC100288231          0.032   PREDICTED: hypothetical protein XP_002343737 
LOC643355             0.032   PREDICTED: hypothetical protein 
LOC643355             0.032   PREDICTED: hypothetical protein 
PLEKHG2               0.032   common-site lymphoma/leukemia guanine nucleotide ex...
LOC100131009          0.029   PREDICTED: hypothetical protein 
LOC100131009          0.029   PREDICTED: hypothetical protein 
LOC100291624          0.029   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.029   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.029   PREDICTED: hypothetical protein XP_002342583 
XIRP1                 0.029   xin actin-binding repeat containing 1 
CRAMP1L               0.026   Crm, cramped-like 
LOC100127930          0.026   PREDICTED: hypothetical protein 
LOC100292387          0.026   PREDICTED: similar to hemicentin 2 
LOC100292865          0.026   PREDICTED: hypothetical protein 
HABP4                 0.026   hyaluronan binding protein 4 
LOC100293776          0.022   PREDICTED: hypothetical protein 
LOC100293575          0.022   PREDICTED: hypothetical protein 
LOC100290681          0.022   PREDICTED: hypothetical protein XP_002346859 
LOC100131774          0.022   PREDICTED: hypothetical protein 
LOC100287330          0.022   PREDICTED: hypothetical protein XP_002342702 
SNRPB                 0.022   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.022   small nuclear ribonucleoprotein polypeptide B/B' isof...
PHOX2A                0.022   paired-like homeobox 2a 
LTK                   0.022   leukocyte receptor tyrosine kinase isoform 1 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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