Guide to the Human Genome
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Name: LOC100128905 Sequence: fasta or formatted (211aa) NCBI GI: 239753362
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {211aa} PREDICTED: hypothetical protein
alt prot {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         19           3
 C cysteine            3.8          8           1
 D aspartate           2.8          6           1
 E glutamate           3.8          8           2
 F phenylalanine       1.9          4           1
 G glycine            10.4         22           2
 H histidine           3.3          7           1
 I isoleucine          0.9          2           1
 K lysine              4.7         10           1
 L leucine             7.1         15           2
 M methionine          1.9          4           1
 N asparagine          1.9          4           1
 P proline            14.2         30           4
 Q glutamine           6.2         13           2
 R arginine            9.5         20           2
 S serine             11.4         24           2
 T threonine           3.8          8           1
 V valine              2.4          5           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128905          0.990   PREDICTED: hypothetical protein 
LOC100128905          0.990   PREDICTED: hypothetical protein 
SRRM2                 0.036   splicing coactivator subunit SRm300 
TNK2                  0.036   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.036   tyrosine kinase, non-receptor, 2 isoform 2 
C15orf42              0.033   leucine-rich repeat kinase 1 
LOC100290139          0.033   PREDICTED: hypothetical protein XP_002346782 
LOC100288835          0.033   PREDICTED: hypothetical protein XP_002342616 
B4GALNT4              0.033   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
WIPF2                 0.031   WIRE protein 
LOC100290372          0.029   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.029   PREDICTED: hypothetical protein XP_002342652 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
PRB2                  0.029   proline-rich protein BstNI subfamily 2 
WT1                   0.029   Wilms tumor 1 isoform D 
WT1                   0.029   Wilms tumor 1 isoform C 
WT1                   0.029   Wilms tumor 1 isoform B 
WT1                   0.029   Wilms tumor 1 isoform A 
LOC100293268          0.029   PREDICTED: hypothetical protein 
LOC100129129          0.026   PREDICTED: hypothetical protein 
KIAA1715              0.026   Lunapark 
GNAS                  0.024   GNAS complex locus alex 
IRS2                  0.024   insulin receptor substrate 2 
OTUD1                 0.024   OTU domain containing 1 
FBLIM1                0.024   filamin-binding LIM protein-1 isoform b 
FBLIM1                0.024   filamin-binding LIM protein-1 isoform a 
MLL4                  0.024   myeloid/lymphoid or mixed-lineage leukemia 4 
KIAA1602              0.024   hypothetical protein LOC57701 
FOXD4                 0.024   forkhead box D4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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