Guide to the Human Genome
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Name: LOC100128905 Sequence: fasta or formatted (211aa) NCBI GI: 239747930
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {211aa} PREDICTED: hypothetical protein
alt prot {211aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         19           3
 C cysteine            3.8          8           1
 D aspartate           2.8          6           1
 E glutamate           3.8          8           2
 F phenylalanine       1.9          4           1
 G glycine            10.4         22           2
 H histidine           3.3          7           1
 I isoleucine          0.9          2           1
 K lysine              4.7         10           1
 L leucine             7.1         15           2
 M methionine          1.9          4           1
 N asparagine          1.9          4           1
 P proline            13.7         29           4
 Q glutamine           6.2         13           2
 R arginine           10.0         21           2
 S serine             11.4         24           2
 T threonine           3.8          8           1
 V valine              2.4          5           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128905          1.000   PREDICTED: hypothetical protein 
LOC100128905          0.993   PREDICTED: hypothetical protein 
C15orf42              0.036   leucine-rich repeat kinase 1 
SRRM2                 0.033   splicing coactivator subunit SRm300 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
LOC100293268          0.029   PREDICTED: hypothetical protein 
LOC100290372          0.029   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.029   PREDICTED: hypothetical protein XP_002342652 
TNK2                  0.029   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.029   tyrosine kinase, non-receptor, 2 isoform 2 
LOC100290139          0.029   PREDICTED: hypothetical protein XP_002346782 
LOC100288835          0.029   PREDICTED: hypothetical protein XP_002342616 
HCN3                  0.029   hyperpolarization activated cyclic nucleotide-gated ...
OTUD1                 0.026   OTU domain containing 1 
PPP1R9B               0.026   protein phosphatase 1, regulatory subunit 9B 
KIAA0284              0.026   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.026   hypothetical protein LOC283638 isoform 1 
IRS2                  0.024   insulin receptor substrate 2 
PRB2                  0.024   proline-rich protein BstNI subfamily 2 
NAV2                  0.024   neuron navigator 2 isoform 3 
NAV2                  0.024   neuron navigator 2 isoform 1 
NAV2                  0.024   neuron navigator 2 isoform 2 
KIAA1602              0.024   hypothetical protein LOC57701 
WIPF2                 0.024   WIRE protein 
PML                   0.024   promyelocytic leukemia protein isoform 11 
PML                   0.024   promyelocytic leukemia protein isoform 10 
LOC100129129          0.024   PREDICTED: hypothetical protein 
SAMD1                 0.024   sterile alpha motif domain containing 1 
LOC100291071          0.021   PREDICTED: hypothetical protein XP_002346951 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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