Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WT1 Sequence: fasta or formatted (514aa) NCBI GI: 65507817
Description:

Wilms tumor 1 isoform B

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [497aa] Wilms tumor 1 isoform A
alt prot [500aa] Wilms tumor 1 isoform C
alt prot [517aa] Wilms tumor 1 isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         39           2
 C cysteine            3.5         18           1
 D aspartate           3.1         16           1
 E glutamate           4.1         21           2
 F phenylalanine       3.7         19           1
 G glycine             9.5         49           5
 H histidine           4.9         25           2
 I isoleucine          1.2          6           1
 K lysine              3.9         20           2
 L leucine             6.2         32           3
 M methionine          2.1         11           1
 N asparagine          2.3         12           1
 P proline            10.7         55           9
 Q glutamine           7.4         38           2
 R arginine            6.2         32           2
 S serine              9.9         51           4
 T threonine           6.0         31           2
 V valine              3.7         19           1
 W tryptophan          1.2          6           1
 Y tyrosine            2.7         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Wilms tumor 1 isoform B 
WT1                   0.995   Wilms tumor 1 isoform D 
WT1                   0.960   Wilms tumor 1 isoform A 
WT1                   0.954   Wilms tumor 1 isoform C 
KLF10                 0.097   Kruppel-like factor 10 isoform b 
KLF10                 0.097   Kruppel-like factor 10 isoform a 
EGR1                  0.097   early growth response 1 
ZNF582                0.095   zinc finger protein 582 
EGR2                  0.093   early growth response 2 protein isoform b 
EGR2                  0.093   early growth response 2 protein isoform a 
EGR2                  0.093   early growth response 2 protein isoform a 
EGR2                  0.093   early growth response 2 protein isoform a 
KLF3                  0.092   Kruppel-like factor 3 (basic) 
EGR3                  0.092   early growth response 3 
KLF5                  0.091   Kruppel-like factor 5 
KLF11                 0.089   Kruppel-like factor 11 
ZNF233                0.089   zinc finger protein 233 
ZNF774                0.089   zinc finger protein 774 
KLF16                 0.088   BTE-binding protein 4 
KLF12                 0.088   Kruppel-like factor 12 
KLF14                 0.088   Kruppel-like factor 14 
ZNF25                 0.088   zinc finger protein 25 
ZNF180                0.088   zinc finger protein 180 
ZNF572                0.087   zinc finger protein 572 
ZNF420                0.087   zinc finger protein 420 
ZNF771                0.087   zinc finger protein 771 
ZNF771                0.087   zinc finger protein 771 
KLF17                 0.087   zinc finger protein 393 
LOC100287429          0.086   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.086   PREDICTED: hypothetical protein XP_002343925 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press