Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: WT1 Sequence: fasta or formatted (500aa) NCBI GI: 65507908
Description:

Wilms tumor 1 isoform C

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [497aa] Wilms tumor 1 isoform A
alt prot [514aa] Wilms tumor 1 isoform B
alt prot [517aa] Wilms tumor 1 isoform D
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         37           2
 C cysteine            3.6         18           1
 D aspartate           3.2         16           1
 E glutamate           4.0         20           2
 F phenylalanine       3.8         19           1
 G glycine             9.4         47           5
 H histidine           5.0         25           2
 I isoleucine          1.2          6           1
 K lysine              4.0         20           2
 L leucine             6.4         32           3
 M methionine          2.2         11           1
 N asparagine          2.2         11           1
 P proline            11.0         55           9
 Q glutamine           7.4         37           2
 R arginine            6.4         32           2
 S serine              9.4         47           2
 T threonine           6.2         31           2
 V valine              3.4         17           1
 W tryptophan          1.0          5           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Wilms tumor 1 isoform C 
WT1                   0.989   Wilms tumor 1 isoform D 
WT1                   0.989   Wilms tumor 1 isoform A 
WT1                   0.979   Wilms tumor 1 isoform B 
KLF10                 0.098   Kruppel-like factor 10 isoform b 
KLF10                 0.098   Kruppel-like factor 10 isoform a 
KLF3                  0.095   Kruppel-like factor 3 (basic) 
EGR1                  0.094   early growth response 1 
KLF5                  0.094   Kruppel-like factor 5 
ZNF582                0.093   zinc finger protein 582 
KLF11                 0.091   Kruppel-like factor 11 
EGR2                  0.090   early growth response 2 protein isoform b 
EGR2                  0.090   early growth response 2 protein isoform a 
EGR2                  0.090   early growth response 2 protein isoform a 
EGR2                  0.090   early growth response 2 protein isoform a 
KLF12                 0.090   Kruppel-like factor 12 
KLF14                 0.090   Kruppel-like factor 14 
EGR3                  0.089   early growth response 3 
KLF17                 0.089   zinc finger protein 393 
KLF7                  0.088   Kruppel-like factor 7 (ubiquitous) 
KLF15                 0.088   Kruppel-like factor 15 
KLF16                 0.088   BTE-binding protein 4 
KLF6                  0.087   Kruppel-like factor 6 isoform A 
ZNF233                0.086   zinc finger protein 233 
ZNF774                0.086   zinc finger protein 774 
KLF1                  0.085   Kruppel-like factor 1 (erythroid) 
KLF8                  0.085   Kruppel-like factor 8 isoform 1 
KLF9                  0.085   Kruppel-like factor 9 
KLF4                  0.085   Kruppel-like factor 4 (gut) 
ZNF25                 0.085   zinc finger protein 25 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press