Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291603 Sequence: fasta or formatted (144aa) NCBI GI: 239753290
Description:

PREDICTED: hypothetical protein XP_002345611

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         24           6
 C cysteine            4.9          7           1
 D aspartate           2.1          3           1
 E glutamate           2.1          3           1
 F phenylalanine       0.0          0           0
 G glycine             9.7         14           2
 H histidine           3.5          5           1
 I isoleucine          0.7          1           1
 K lysine              0.0          0           0
 L leucine             6.9         10           4
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline            13.2         19           2
 Q glutamine           2.1          3           1
 R arginine           13.9         20           4
 S serine             10.4         15           2
 T threonine           3.5          5           1
 V valine              6.2          9           2
 W tryptophan          2.1          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345611 
LOC100287807          0.663   PREDICTED: hypothetical protein 
LOC100287807          0.663   PREDICTED: hypothetical protein XP_002342309 
LOC100293975          0.050   PREDICTED: hypothetical protein 
LOC100290812          0.050   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.050   PREDICTED: hypothetical protein XP_002343496 
IRX4                  0.047   iroquois homeobox 4 
BHLHA9                0.039   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.039   PREDICTED: basic helix-loop-helix family, member a9...
LOC100134209          0.036   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC728056             0.036   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.036   PREDICTED: hypothetical protein 
LOC728056             0.036   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC100288881          0.036   PREDICTED: hypothetical protein XP_002343185 
FOXJ2                 0.036   forkhead box J2 
ARTN                  0.036   neurotrophic factor artemin isoform 2 
ARTN                  0.036   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.036   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.036   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.036   neurotrophic factor artemin isoform 3 precursor [Ho...
ANKRD56               0.036   ankyrin repeat domain 56 
KDM1                  0.036   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.036   amine oxidase (flavin containing) domain 2 isoform b...
ARID1A                0.036   AT rich interactive domain 1A isoform a 
ARID1A                0.036   AT rich interactive domain 1A isoform b 
ZBTB4                 0.036   zinc finger and BTB domain containing 4 
ZBTB4                 0.036   zinc finger and BTB domain containing 4 
PSRC1                 0.032   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.032   proline/serine-rich coiled-coil 1 isoform a 
KIAA1543              0.032   NEZHA isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press