Guide to the Human Genome
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Name: LOC100287807 Sequence: fasta or formatted (595aa) NCBI GI: 239747859
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {404aa} PREDICTED: hypothetical protein XP_002342309
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         66           6
 C cysteine            2.2         13           1
 D aspartate           4.0         24           1
 E glutamate           6.6         39           3
 F phenylalanine       1.8         11           1
 G glycine            10.6         63           2
 H histidine           3.0         18           2
 I isoleucine          1.2          7           1
 K lysine              3.2         19           1
 L leucine            10.1         60           4
 M methionine          1.7         10           1
 N asparagine          2.0         12           2
 P proline             8.9         53           2
 Q glutamine           6.6         39           2
 R arginine            7.7         46           4
 S serine              7.7         46           2
 T threonine           4.4         26           2
 V valine              5.7         34           2
 W tryptophan          1.3          8           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287807          0.553   PREDICTED: hypothetical protein XP_002342309 
LOC100291603          0.156   PREDICTED: hypothetical protein XP_002345611 
LOC100293274          0.013   PREDICTED: similar to hCG1994130 
LOC100290882          0.013   PREDICTED: hypothetical protein XP_002347835 
LOC100288781          0.013   PREDICTED: hypothetical protein XP_002343613 
ARTN                  0.012   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.012   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.012   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.012   neurotrophic factor artemin isoform 3 precursor [Ho...
FAM48B1               0.012   hypothetical protein LOC100130302 
MIA3                  0.010   melanoma inhibitory activity family, member 3 [Homo...
LOC100129852          0.010   PREDICTED: hypothetical protein 
LOC100129852          0.010   PREDICTED: hypothetical protein 
LOC100129852          0.010   PREDICTED: hypothetical protein 
ARTN                  0.010   neurotrophic factor artemin isoform 2 
LOC100294388          0.009   PREDICTED: hypothetical protein 
BHLHA9                0.009   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.009   PREDICTED: basic helix-loop-helix family, member a9...
MLL4                  0.009   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100134209          0.008   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC728056             0.008   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC731035             0.008   PREDICTED: hypothetical protein 
LOC728056             0.008   PREDICTED: similar to IQ motif and SEC7 domain-cont...
LOC100288881          0.008   PREDICTED: hypothetical protein XP_002343185 
FUSSEL18              0.008   PREDICTED: functional smad suppressing element 18 [...
LOC100293212          0.008   PREDICTED: hypothetical protein 
FUSSEL18              0.008   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.008   PREDICTED: functional smad suppressing element 18 [...
LOC388279             0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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