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Search of human proteins with 239753266
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753266 PREDICTED: hypothetical protein [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753266 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115
gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo ... 291 2e-79
gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo ... 291 2e-79
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo... 35 0.040
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo... 35 0.040
gi|239753216 PREDICTED: similar to immunoglobulin superfamily, m... 34 0.068
gi|169167080 PREDICTED: hypothetical protein [Homo sapiens] 33 0.15
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 33 0.15
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 33 0.15
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 33 0.20
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 33 0.20
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 32 0.26
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 32 0.26
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 32 0.26
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 32 0.34
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ... 32 0.34
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 32 0.34
gi|57864582 hornerin [Homo sapiens] 32 0.44
gi|62122917 filaggrin family member 2 [Homo sapiens] 31 0.58
gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens] 31 0.58
gi|8923665 CUE domain-containing 1 [Homo sapiens] 31 0.58
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 31 0.76
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 0.99
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 30 0.99
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 30 0.99
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 30 0.99
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 30 0.99
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 30 0.99
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 30 0.99
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 30 0.99
>gi|239753266 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 410 bits (1053), Expect = e-115
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MPLGKREAASKHHFGGGCMKEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRV 60
MPLGKREAASKHHFGGGCMKEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRV
Sbjct: 1 MPLGKREAASKHHFGGGCMKEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRV 60
Query: 61 GGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNAS 120
GGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNAS
Sbjct: 61 GGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSSWNAS 120
Query: 121 LTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTF 180
LTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTF
Sbjct: 121 LTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPGTEGVLTF 180
Query: 181 GVWADSVGFSSLQL 194
GVWADSVGFSSLQL
Sbjct: 181 GVWADSVGFSSLQL 194
>gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo
sapiens]
Length = 183
Score = 291 bits (745), Expect = 2e-79
Identities = 138/141 (97%), Positives = 138/141 (97%)
Query: 54 GVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA 113
G PRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA
Sbjct: 43 GGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA 102
Query: 114 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG 173
DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG
Sbjct: 103 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG 162
Query: 174 TEGVLTFGVWADSVGFSSLQL 194
TEGVLTFGVWADSVGFSSLQL
Sbjct: 163 TEGVLTFGVWADSVGFSSLQL 183
>gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo
sapiens]
Length = 183
Score = 291 bits (745), Expect = 2e-79
Identities = 138/141 (97%), Positives = 138/141 (97%)
Query: 54 GVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA 113
G PRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA
Sbjct: 43 GGSSPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVA 102
Query: 114 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG 173
DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG
Sbjct: 103 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAVLAIQMPG 162
Query: 174 TEGVLTFGVWADSVGFSSLQL 194
TEGVLTFGVWADSVGFSSLQL
Sbjct: 163 TEGVLTFGVWADSVGFSSLQL 183
>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
sapiens]
Length = 1214
Score = 35.0 bits (79), Expect = 0.040
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 47 GGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGT-QPGSASWERSQVG 97
G PQG F V V + +R W RDGT QPGS+ WERS G
Sbjct: 458 GRPQGRFSVIWQLVD-------RQNRRSNIMWLDRDGTVQPGSSYWERSSFG 502
>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 35.0 bits (79), Expect = 0.040
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 47 GGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGT-QPGSASWERSQVG 97
G PQG F V V + +R W RDGT QPGS+ WERS G
Sbjct: 438 GRPQGRFSVIWQLVD-------RQNRRSNIMWLDRDGTVQPGSSYWERSSFG 482
>gi|239753216 PREDICTED: similar to immunoglobulin superfamily,
member 3 [Homo sapiens]
Length = 376
Score = 34.3 bits (77), Expect = 0.068
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 47 GGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGT-QPGSASWERSQVG 97
G PQG F V V + +R W RDGT QPGS+ WERS G
Sbjct: 271 GRPQGRFSVIWQLVD-------RQNRRSDIMWLDRDGTVQPGSSYWERSSFG 315
>gi|169167080 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 33.1 bits (74), Expect = 0.15
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 49 PQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTG 102
P G G P Q G +ER+RRRR QR + P A W R + GRA+ G
Sbjct: 112 PHPGSG-SVPLSQALQSPGSQERRRRRR--RQRPASSP-EAKWRRLEGGRAAAG 161
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 33.1 bits (74), Expect = 0.15
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 9 ASKHHFGGGCMKEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGR 68
AS HH C + + + L KG S + G P G G P G G R
Sbjct: 2047 ASSHHHHHRCHRRRDRKQRSLE--KGPS----LSADMDGAPSSAVGPGLPPGEGPTG-CR 2099
Query: 69 EERKRRRRWWPQRDGTQPGSASWERSQ 95
ER+RR+ ++ QP S+S E+ +
Sbjct: 2100 RERERRQERGRSQERRQPSSSSSEKQR 2126
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 33.1 bits (74), Expect = 0.15
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 34 GDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWER 93
G+ G QR E P G C G +GE +++ RRRR + + G+A+
Sbjct: 82 GEEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAA--- 138
Query: 94 SQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQ-CPGFRPPSPGS 146
RA A A C G + SR A G G ++ PG RPP P +
Sbjct: 139 ----RA----ADAACNGLPG--------SDSRRAPGKGGGSKGSPGQRPPVPAA 176
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 32.7 bits (73), Expect = 0.20
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 69 EERKRRRRWWPQRDGTQP----GSASWERSQVGRASTGDALALCLGWVADSS-----WNA 119
E K + + W + P G W S GD GW ADS+ WN
Sbjct: 573 EPPKPKSQHWGDGQRSNPAWSAGGGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSGWND 632
Query: 120 SLTSSRLAWGYSGDTQC-PGFR-----PPSPGSLWTQLP 152
+ S WG S +T+ PG P P W P
Sbjct: 633 TTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNWASKP 671
Score = 28.9 bits (63), Expect = 2.9
Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 26/198 (13%)
Query: 8 AASKHHFGGGCMKEKSSL---EPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQ 64
A S H + G +E S EP S+ GQR G GG V G
Sbjct: 552 AKSGHAWSGAANQEDKSPTWGEPPKPKSQHWGDGQRSNPAWSAG--GGDWADSSSVLGHL 609
Query: 65 GEGRE-------ERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCL------GW 111
G+G++ + R W D T+ G++ W S +A+ G L W
Sbjct: 610 GDGKKNGSGWDADSNRSGSGW--NDTTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNW 667
Query: 112 VAD------SSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQA 165
+ S+W + + + G+ G + S + W + P S+R E
Sbjct: 668 ASKPQDNNVSNWGGAASVKQTGTGWIGGPVPVKQKDSSEATGWEEPSPPSIRRKMEIDDG 727
Query: 166 VLAIQMPGTEGVLTFGVW 183
A P T +W
Sbjct: 728 TSAWGDPSNYNNKTVNMW 745
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 32.7 bits (73), Expect = 0.20
Identities = 27/99 (27%), Positives = 34/99 (34%), Gaps = 15/99 (15%)
Query: 69 EERKRRRRWWPQRDGTQP----GSASWERSQVGRASTGDALALCLGWVADSS-----WNA 119
E K + + W + P G W S GD GW ADS+ WN
Sbjct: 573 EPPKPKSQHWGDGQRSNPAWSAGGGDWADSSSVLGHLGDGKKNGSGWDADSNRSGSGWND 632
Query: 120 SLTSSRLAWGYSGDTQC-PGFR-----PPSPGSLWTQLP 152
+ S WG S +T+ PG P P W P
Sbjct: 633 TTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNWASKP 671
Score = 28.9 bits (63), Expect = 2.9
Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 26/198 (13%)
Query: 8 AASKHHFGGGCMKEKSSL---EPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQ 64
A S H + G +E S EP S+ GQR G GG V G
Sbjct: 552 AKSGHAWSGAANQEDKSPTWGEPPKPKSQHWGDGQRSNPAWSAG--GGDWADSSSVLGHL 609
Query: 65 GEGRE-------ERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCL------GW 111
G+G++ + R W D T+ G++ W S +A+ G L W
Sbjct: 610 GDGKKNGSGWDADSNRSGSGW--NDTTRSGNSGWGNSTNTKANPGTNWGETLKPGPQQNW 667
Query: 112 VAD------SSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQA 165
+ S+W + + + G+ G + S + W + P S+R E
Sbjct: 668 ASKPQDNNVSNWGGAASVKQTGTGWIGGPVPVKQKDSSEATGWEEPSPPSIRRKMEIDDG 727
Query: 166 VLAIQMPGTEGVLTFGVW 183
A P T +W
Sbjct: 728 TSAWGDPSNYNNKTVNMW 745
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.3 bits (72), Expect = 0.26
Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 33 KGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWE 92
KGD G + I G KGG G G P G A G R+ ++RRR + GT+ G+
Sbjct: 131 KGDFGPKGI--GMKGG-----GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPG 183
Query: 93 RSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSP--GSLWTQ 150
G A+ G G L +SG P RPPSP G+
Sbjct: 184 VRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPA-RPPSPPAGAPEAL 242
Query: 151 LPPTS 155
PP S
Sbjct: 243 RPPAS 247
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.3 bits (72), Expect = 0.26
Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 33 KGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWE 92
KGD G + I G KGG G G P G A G R+ ++RRR + GT+ G+
Sbjct: 131 KGDFGPKGI--GMKGG-----GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPG 183
Query: 93 RSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSP--GSLWTQ 150
G A+ G G L +SG P RPPSP G+
Sbjct: 184 VRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPA-RPPSPPAGAPEAL 242
Query: 151 LPPTS 155
PP S
Sbjct: 243 RPPAS 247
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.3 bits (72), Expect = 0.26
Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 33 KGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWE 92
KGD G + I G KGG G G P G A G R+ ++RRR + GT+ G+
Sbjct: 131 KGDFGPKGI--GMKGG-----GPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPG 183
Query: 93 RSQVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSP--GSLWTQ 150
G A+ G G L +SG P RPPSP G+
Sbjct: 184 VRGQGAAAVGPTGPRPTGAPPSRRTPPPGPRRPLRSPHSGSGWTPA-RPPSPPAGAPEAL 242
Query: 151 LPPTS 155
PP S
Sbjct: 243 RPPAS 247
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 32.0 bits (71), Expect = 0.34
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 6 REAASKHHFGGGCM--KEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGG---FGVGCPR- 59
RE A H G C +L S G GG + + GPQGG G+G P
Sbjct: 481 RERARLFHLGRRCALANRAPALLRAQAASAGRDGGGAMAPQMRLGPQGGERDAGLGRPHQ 540
Query: 60 -VGGAQGEGREERKRRRRWWPQR 81
+ G+G +R+RRR QR
Sbjct: 541 LIHDRLGQGARQRERRRAVGRQR 563
>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
sapiens]
Length = 457
Score = 32.0 bits (71), Expect = 0.34
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 6 REAASKHHFGGGCM--KEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGG---FGVGCPR- 59
RE A H G C +L S G GG + + GPQGG G+G P
Sbjct: 338 RERARLFHLGRRCALANRAPALLRAQAASAGRDGGGAMAPQMRLGPQGGERDAGLGRPHQ 397
Query: 60 -VGGAQGEGREERKRRRRWWPQR 81
+ G+G +R+RRR QR
Sbjct: 398 LIHDRLGQGARQRERRRAVGRQR 420
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 32.0 bits (71), Expect = 0.34
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 61 GGAQGEGREERKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLGWVADSS 116
G A RE R+ + R W R G +PG V + LA C G D +
Sbjct: 12 GAAAAAARERRREQLRQWGARAGAEPGPGERRARTVRFERAAEFLAACAGGDLDEA 67
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.6 bits (70), Expect = 0.44
Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 11/115 (9%)
Query: 44 GQKGGPQGGFG---------VGCPRVGGAQGEGREERKRRRRWWPQRDGTQPGSASWERS 94
G G GFG GC + G G + R G + GS+S S
Sbjct: 1392 GSGSGQSSGFGHHESSSWQSSGCTQHGSGSGHSSSYEQHGSRSGQSSRGERHGSSSGSSS 1451
Query: 95 QVGRASTGDALALCLGWVADSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWT 149
G+ +G +L G S S + SR G SG Q + P GS W+
Sbjct: 1452 SYGQHGSGSRQSLGHGQHGSGS-GQSPSPSRGRHG-SGSGQSSSYSPYGSGSGWS 1504
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 31.2 bits (69), Expect = 0.58
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 4 GKREAASKHHFGGGCMKEKSSLEPELRFSKGDSGGQ--RIVEGQKGGPQGGFGVGCPRVG 61
G+R A + GC + +++ G G Q I G + G +GG G GC G
Sbjct: 274 GRRSHACGYSNSSGCGRPQNASSSCQSHRFGGQGNQFSYIQSGCQSGIKGGQGHGCVSGG 333
Query: 62 GAQGEGREE-----RKRRRRWWPQRDGTQPGSASWERSQVGRASTGDALALCLG 110
G G+ E + +R + R+ QP + G+ TG + + C G
Sbjct: 334 QPSGCGQPESNPCSQSYSQRGYGARENGQPQNCG------GQWRTGSSQSSCCG 381
>gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens]
Length = 412
Score = 31.2 bits (69), Expect = 0.58
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 14 FGGGCMKEKSSLEPELRFSKGDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGREERKR 73
F G +KE+ S E F G G +EG++ G GGFG P G + +G E ++R
Sbjct: 151 FISGDLKERDSWRVEGCFGGGAQGLLTGLEGRQEG--GGFG---PGAGRRRWKGNEHKRR 205
Query: 74 RR 75
R+
Sbjct: 206 RQ 207
>gi|8923665 CUE domain-containing 1 [Homo sapiens]
Length = 386
Score = 31.2 bits (69), Expect = 0.58
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 42 VEGQKGGPQGGFGVGCPRVGGAQGEGREERK 72
++G GGP+ G G GCP G G +E +
Sbjct: 196 IQGNAGGPKPGSGEGCPPAMAGPGPGDQESR 226
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 0.76
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 34 GDSGGQRIVEGQKGGPQGGFGVGCPRVGGAQGEGREERKRR 74
GD GG R G+ GG +GGFG P ++GE R++R+ R
Sbjct: 489 GDRGGFR--GGRGGGDRGGFG---PGKMDSRGEHRQDRRER 524
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 0.99
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 4 GKREAASKHHFGGGCMKEKSSLEPELRFSKGDSGGQRIVE-GQKGGPQGGFGVGCPRVGG 62
GK+ AASK H GGG + + +K SG + + GQK G G PRV
Sbjct: 750 GKKAAASKSHGGGGAKRRRGG------GAKSRSGEKAVTAGGQKAAAAG--GKKPPRVKS 801
Query: 63 AQGEGRE 69
G G++
Sbjct: 802 RGGRGQK 808
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 30.4 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 34 GDSGGQRIVEGQKG----GPQGGFGVGCPRVGGAQGEGREERKR---RRRWWPQRDG 83
GD G ++ G G GP GG +G R G G R+R R WP G
Sbjct: 238 GDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGG 294
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 30.4 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 34 GDSGGQRIVEGQKG----GPQGGFGVGCPRVGGAQGEGREERKR---RRRWWPQRDG 83
GD G ++ G G GP GG +G R G G R+R R WP G
Sbjct: 238 GDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGG 294
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 30.4 bits (67), Expect = 0.99
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 34 GDSGGQRIVEGQKG----GPQGGFGVGCPRVGGAQGEGREERKR---RRRWWPQRDG 83
GD G ++ G G GP GG +G R G G R+R R WP G
Sbjct: 238 GDEGALQVGHGPAGRELEGPGGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGG 294
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 30.4 bits (67), Expect = 0.99
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 28 ELRFSKGDSGGQRIVEGQKG--GPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGT- 84
++ F KGD G + G +G GP G G P GG +GE E+ + +R P +DG
Sbjct: 252 DVEFQKGDQG----LPGDRGPPGPPGIRGPPGPP-GGEKGEKGEQGEPGKRGKPGKDGEN 306
Query: 85 -QPG 87
QPG
Sbjct: 307 GQPG 310
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 30.4 bits (67), Expect = 0.99
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 28 ELRFSKGDSGGQRIVEGQKG--GPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGT- 84
++ F KGD G + G +G GP G G P GG +GE E+ + +R P +DG
Sbjct: 252 DVEFQKGDQG----LPGDRGPPGPPGIRGPPGPP-GGEKGEKGEQGEPGKRGKPGKDGEN 306
Query: 85 -QPG 87
QPG
Sbjct: 307 GQPG 310
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 30.4 bits (67), Expect = 0.99
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 28 ELRFSKGDSGGQRIVEGQKG--GPQGGFGVGCPRVGGAQGEGREERKRRRRWWPQRDGT- 84
++ F KGD G + G +G GP G G P GG +GE E+ + +R P +DG
Sbjct: 252 DVEFQKGDQG----LPGDRGPPGPPGIRGPPGPP-GGEKGEKGEQGEPGKRGKPGKDGEN 306
Query: 85 -QPG 87
QPG
Sbjct: 307 GQPG 310
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 30.4 bits (67), Expect = 0.99
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 114 DSSWNASLTSSRLAWGYSGDTQCPGFRPPSPGSLWTQLPPTSLRATGEQGQAV 166
D SW+ S S + + + P +RPP W Q PP R+ GE+ + V
Sbjct: 204 DPSWDFSPPS----FLETSSPKLPSWRPPRSRPRWGQSPPPQQRSDGEEEEEV 252
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,578,636
Number of Sequences: 37866
Number of extensions: 507155
Number of successful extensions: 1803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 147
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.