Guide to the Human Genome
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Name: CUEDC1 Sequence: fasta or formatted (386aa) NCBI GI: 8923665
Description:

CUE domain-containing 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         30           3
 C cysteine            0.8          3           1
 D aspartate           7.3         28           2
 E glutamate           7.5         29           2
 F phenylalanine       3.9         15           1
 G glycine            10.1         39           5
 H histidine           1.6          6           1
 I isoleucine          2.3          9           2
 K lysine              4.7         18           1
 L leucine             9.1         35           2
 M methionine          2.6         10           1
 N asparagine          3.9         15           2
 P proline             8.5         33           3
 Q glutamine           4.4         17           2
 R arginine            8.0         31           2
 S serine              8.8         34           3
 T threonine           3.1         12           1
 V valine              3.1         12           1
 W tryptophan          0.5          2           1
 Y tyrosine            2.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUE domain-containing 1 
CCNK                  0.025   cyclin K isoform 1 
SOX11                 0.024   SRY-box 11 
INF2                  0.022   inverted formin 2 isoform 2 
INF2                  0.022   inverted formin 2 isoform 1 
DUSP27                0.020   dual specificity phosphatase 27 
MN1                   0.020   meningioma  1 
TOLLIP                0.018   toll interacting protein 
DVL2                  0.018   dishevelled 2 
YLPM1                 0.018   YLP motif containing 1 
MLL5                  0.016   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.016   myeloid/lymphoid or mixed-lineage leukemia 5 
EMILIN1               0.016   elastin microfibril interfacer 1 
WBP11                 0.016   WW domain binding protein 11 
ZBTB7B                0.016   zinc finger and BTB domain containing 7B 
LOC100293130          0.016   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.016   PREDICTED: similar to kruppel-related zinc finger p...
LOC100293130          0.016   PREDICTED: similar to kruppel-related zinc finger p...
TAOK2                 0.016   TAO kinase 2 isoform 1 
ANKRD17               0.016   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.016   ankyrin repeat domain protein 17 isoform b 
CDV3                  0.014   carnitine deficiency-associated gene expressed in v...
CDV3                  0.014   carnitine deficiency-associated gene expressed in ven...
NCCRP1                0.014   non-specific cytotoxic cell receptor protein 1 homol...
SFPQ                  0.014   splicing factor proline/glutamine rich (polypyrimidin...
FAM113A               0.014   hypothetical protein LOC64773 
RASIP1                0.013   Ras-interacting protein 1 
SFRS18                0.013   splicing factor, arginine/serine-rich 130 
SFRS18                0.013   splicing factor, arginine/serine-rich 130 
RXRB                  0.013   retinoid X receptor, beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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