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Search of human proteins with 239753192
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753192 PREDICTED: hypothetical protein [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753192 PREDICTED: hypothetical protein [Homo sapiens] 680 0.0
gi|239747766 PREDICTED: hypothetical protein [Homo sapiens] 680 0.0
gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo ... 545 e-155
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 36 0.054
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 33 0.27
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 33 0.27
gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isof... 33 0.46
gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isof... 33 0.46
gi|30795231 brain abundant, membrane attached signal protein 1 [... 32 0.60
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens] 32 1.0
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 31 1.7
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo sa... 31 1.7
gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo sa... 31 1.7
gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo sa... 31 1.7
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 30 2.3
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 30 2.3
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 30 2.3
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 30 2.3
gi|239753034 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239747584 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239741451 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|55750053 atrophin-1 [Homo sapiens] 30 3.9
gi|55750041 atrophin-1 [Homo sapiens] 30 3.9
gi|14249622 ajuba isoform 1 [Homo sapiens] 30 3.9
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 30 3.9
gi|168229161 coronin 7 [Homo sapiens] 30 3.9
>gi|239753192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 680 bits (1755), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60
MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG
Sbjct: 1 MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60
Query: 61 QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120
QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA
Sbjct: 61 QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120
Query: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180
PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG
Sbjct: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180
Query: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240
PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG
Sbjct: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240
Query: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR
Sbjct: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
Query: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331
AGESFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331
>gi|239747766 PREDICTED: hypothetical protein [Homo sapiens]
Length = 331
Score = 680 bits (1755), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60
MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG
Sbjct: 1 MGHWASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHG 60
Query: 61 QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120
QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA
Sbjct: 61 QDKFADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREA 120
Query: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180
PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG
Sbjct: 121 PYHHLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLG 180
Query: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240
PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG
Sbjct: 181 PRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENG 240
Query: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR
Sbjct: 241 GRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
Query: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331
AGESFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 301 AGESFTKIPPHALAGGRRALPRELSFQNKVC 331
>gi|239741632 PREDICTED: hypothetical protein XP_002342252 [Homo
sapiens]
Length = 494
Score = 545 bits (1405), Expect = e-155
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 64 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 123
FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH
Sbjct: 227 FADLVRAAVGTASASATVFQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPREAPYH 286
Query: 124 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 183
HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI
Sbjct: 287 HLALREVIKAWQNSQESTRVKASGFSLVDGCLFSTPLHLLCSSLIGLRRGPLSHLLGPRI 346
Query: 184 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 243
WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD
Sbjct: 347 WGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRD 406
Query: 244 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 303
GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE
Sbjct: 407 GACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGE 466
Query: 304 SFTKIPPHALAGGRRALPRELSFQNKVC 331
SFTKIPPHALAGGRRALPRELSFQNKVC
Sbjct: 467 SFTKIPPHALAGGRRALPRELSFQNKVC 494
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 35.8 bits (81), Expect = 0.054
Identities = 37/126 (29%), Positives = 46/126 (36%), Gaps = 8/126 (6%)
Query: 4 WASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSG-HTASTRHGQD 62
W S T TTP TS V+ + G P V A P S T+ T
Sbjct: 3893 WISTT-TTPTTSGSTVTPSSVPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLI 3951
Query: 63 KFADLVRAAVGTASASATV----FQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPR 118
A + A T + S+T P T+TTP ST++ S LG T H P P
Sbjct: 3952 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTT--HTPPVPN 4009
Query: 119 EAPYHH 124
H
Sbjct: 4010 TTATTH 4015
Score = 34.3 bits (77), Expect = 0.16
Identities = 36/126 (28%), Positives = 45/126 (35%), Gaps = 8/126 (6%)
Query: 4 WASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSG-HTASTRHGQD 62
W S T TTP T V+ + G P V A P S T+ T
Sbjct: 2636 WISTT-TTPTTRGSTVTPSSIPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLT 2694
Query: 63 KFADLVRAAVGTASASATV----FQPPAGLTSTTPFPFLSTISTPSELGLTPSHGEPRPR 118
A + A T + S+T P T+TTP ST++ S LG T H P P
Sbjct: 2695 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTT--HTPPVPN 2752
Query: 119 EAPYHH 124
H
Sbjct: 2753 TTATTH 2758
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 4 WASRTITTPNTSNREVSQAGAGGCICDPDVCFNQKQGKQGPESAVPGSG-HTASTRHGQD 62
W S T TTP T V+ + G V A P S T+ T
Sbjct: 3336 WISTT-TTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLT 3394
Query: 63 KFADLVRAAVGTASASATV----FQPPAGLTSTTPFPFLSTISTPSELGLT--------- 109
A + A T + S+T P T+TTP ST++ S LG T
Sbjct: 3395 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT 3454
Query: 110 -PSHGEPRPREAPY 122
+HG P +P+
Sbjct: 3455 ATTHGRSLPPSSPH 3468
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 33.5 bits (75), Expect = 0.27
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 178 LLGPRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGR 237
L+ PR+ RTP R+G+ LP+ R R ++ SG +F G
Sbjct: 135 LVAPRVLPRTPQRWTRRGV---------GGRLPQAARSSPRGSKLSGAASPT--AIFPGT 183
Query: 238 ENGGRDGACSIEVLPRTSGRTHPA-PAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSS 296
GR G C+ + R A P PC R A + P KLP++
Sbjct: 184 RGSGRGGGCNCGGGSCSCCRWSMAGPFPCARRATCLASLSPPP------------KLPTA 231
Query: 297 PPPRA 301
P PRA
Sbjct: 232 PGPRA 236
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 33.5 bits (75), Expect = 0.27
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 237 RENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAG--GPGFKG 283
RE G +GA L + R PAP P AS RAAG GPGF G
Sbjct: 221 REPGRAEGASREPRLRSRAARPPPAPGPGALSRASRSRAAGRPGPGFHG 269
>gi|34147621 adenosine monophosphate deaminase 2 (isoform L) isoform
2 [Homo sapiens]
Length = 798
Score = 32.7 bits (73), Expect = 0.46
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 252 PRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPP- 310
P S R+ P PAPCL+ LR + K + + F R L S A F + P
Sbjct: 13 PLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPI 72
Query: 311 HALAGGRRALPRELS 325
L R+ L R++S
Sbjct: 73 EQLEERRQRLERQIS 87
>gi|21264318 adenosine monophosphate deaminase 2 (isoform L) isoform
1 [Homo sapiens]
Length = 879
Score = 32.7 bits (73), Expect = 0.46
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 252 PRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPRAGESFTKIPP- 310
P S R+ P PAPCL+ LR + K + + F R L S A F + P
Sbjct: 94 PLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPI 153
Query: 311 HALAGGRRALPRELS 325
L R+ L R++S
Sbjct: 154 EQLEERRQRLERQIS 168
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 32.3 bits (72), Expect = 0.60
Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 23 GAGGCICDPDVCFNQKQGKQGP-----------------ESAVPGSGHTASTRHGQDKF- 64
GA +P Q+Q GP ESA P +G S G+ K
Sbjct: 92 GAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKT 151
Query: 65 -ADLVRAAVGTASASATVFQPPAGLTST------TPFPFLSTISTPSELGLTPSHGEPRP 117
A AA T S A G + TP + STP G S EP+P
Sbjct: 152 EAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKP 211
Query: 118 REAP 121
EAP
Sbjct: 212 VEAP 215
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 31.6 bits (70), Expect = 1.0
Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 25/160 (15%)
Query: 173 GPLSHLLGPRIWGRTPAAALRKGIILARVWTLEKAVLPEKDRKGKRITRGSGTTFTCHFF 232
GP PR W P + R G++L L +++L + R+ + R G+ C
Sbjct: 118 GPTPIPRAPRPWRPPPPSPGRVGVLLE---VLPRSLL--QIRRALALGRQRGSYRICANG 172
Query: 233 LFLGRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRK 292
+ + + C +L R G+ +P R A GPG + + R L +
Sbjct: 173 FY---KQSRKTPVCCRVLLVRARGKPGCSPR----------RGAAGPGACELGEGRRLPR 219
Query: 293 LPS-SPP--PRAGESFTKIPPHALAGGRRALPRELSFQNK 329
P SPP P + ++ ++PP GGR A P S N+
Sbjct: 220 APGPSPPPLPASADAAGRLPP----GGRLAHPGSASGPNR 255
>gi|76881819 sterile alpha motif domain containing 11 [Homo sapiens]
Length = 681
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 22/103 (21%)
Query: 34 CFNQKQGK-QGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVFQPPAGLTSTT 92
CF++K+ + + P+ A+ + +D + LV +A + A+ F+ P L
Sbjct: 161 CFSEKRARSESPQEALLLPRELGPSMAPEDHYRRLV-----SALSEASTFEDPQRLY--- 212
Query: 93 PFPFLSTISTPSELGLTPSHGEPRPREAPYHHLALREVIKAWQ 135
LGL PSHGE P P HHL ++++ Q
Sbjct: 213 ------------HLGL-PSHGEDPPWHDPPHHLPSHDLLRVRQ 242
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 30.8 bits (68), Expect = 1.7
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 238 ENGGRDGACSIEVLPRTSGRTHPAP-------APCLREAASGLRAAGG--------PGFK 282
E GG DG + ++ P + AP +P L E A G A GG PG +
Sbjct: 20 EPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWSAGPAPGLE 79
Query: 283 GVIKVRFLRKLPSSPPPRAGESFTKIPPHALAGGRRA 319
G + PS+PPPR+G P A G R+
Sbjct: 80 GGPR----DPGPSAPPPRSGPRGQLASPDAPGPGPRS 112
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.8 bits (68), Expect = 1.7
Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 20/103 (19%)
Query: 2 GHWASRTITTPNTSNREVSQAGAGGCICDP------------DVCFNQKQGKQGPESAVP 49
GH S P S GAGG +C P ++ G GP P
Sbjct: 51 GH--SPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAP 108
Query: 50 GSGHTASTRH------GQDKFADLVRAAVGTASASATVFQPPA 86
G G A+TR + A + RA TA++SA PA
Sbjct: 109 GRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPA 151
>gi|40548413 dynein 2 light intermediate chain isoform 1 [Homo
sapiens]
Length = 351
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
Query: 261 APAPCLREAASGLRAAG 277
E G RA G
Sbjct: 58 PKPTLALEYTYGRRAKG 74
>gi|29824427 dynein 2 light intermediate chain isoform 2 [Homo
sapiens]
Length = 201
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
Query: 261 APAPCLREAASGLRAAG 277
E G RA G
Sbjct: 58 PKPTLALEYTYGRRAKG 74
>gi|61102732 dynein 2 light intermediate chain isoform 3 [Homo
sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 201 VWTLEKAVLPEKDRKGKRITRGSGTTFTCHFFLFLGRENGGRDGACSIEVLPRTSGRTHP 260
+W + KA E +++G + G G F F+G +NGG+ ++ R R P
Sbjct: 6 LWEIAKA---EVEKRGINGSEGDGAEIAEKFVFFIGSKNGGK-----TTIILRCLDRDEP 57
Query: 261 APAPCLREAASGLRAAG 277
E G RA G
Sbjct: 58 PKPTLALEYTYGRRAKG 74
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 30.4 bits (67), Expect = 2.3
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 236 GRENGGRDGACSIEVLPRTSGRT------HPAPAPCLREAASGLRAAGGPG 280
GR GG G+ S P T R PAP PC SG +A GG G
Sbjct: 157 GRAGGGIPGSSSPH--PGTGSRRLKVAPPPPAPKPCKTVTTSGAKAGGGKG 205
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 23 GAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVF 82
G GG C+P++ G G G +ST + A+ G++S+S++
Sbjct: 98 GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTP---------INASTGSSSSSSSSS 148
Query: 83 QPPAGLTSTT-------PFPFLSTISTPSELGLTPSHGE 114
+ +S++ P P STPS + TP + E
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNE 187
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 23 GAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVF 82
G GG C+P++ G G G +ST + A+ G++S+S++
Sbjct: 98 GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTP---------INASTGSSSSSSSSS 148
Query: 83 QPPAGLTSTT-------PFPFLSTISTPSELGLTPSHGE 114
+ +S++ P P STPS + TP + E
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNE 187
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 30.4 bits (67), Expect = 2.3
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 23 GAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATVF 82
G GG C+P++ G G G +ST + A+ G++S+S++
Sbjct: 98 GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTP---------INASTGSSSSSSSSS 148
Query: 83 QPPAGLTSTT-------PFPFLSTISTPSELGLTPSHGE 114
+ +S++ P P STPS + TP + E
Sbjct: 149 SSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVENTPQNNE 187
>gi|239753034 PREDICTED: hypothetical protein [Homo sapiens]
Length = 429
Score = 30.0 bits (66), Expect = 3.0
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 255 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 306
SGR+ P P L+ +GGPG R L+ P SP P R+GE
Sbjct: 364 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 416
Query: 307 KIPPHALAGGRR 318
GGRR
Sbjct: 417 DTEARGPVGGRR 428
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 30.0 bits (66), Expect = 3.0
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 260 PAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR----AGESFTKIPPHALAG 315
P P A + AA PG L PSSPPPR +G +PP ALA
Sbjct: 95 PLPPALQPRGAPAVPAAPSPGP--------LPARPSSPPPRPSLPSGPHRPVLPPSALAA 146
Query: 316 GRRALPREL 324
R L R L
Sbjct: 147 PRPPLARPL 155
>gi|239747584 PREDICTED: hypothetical protein [Homo sapiens]
Length = 429
Score = 30.0 bits (66), Expect = 3.0
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 255 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 306
SGR+ P P L+ +GGPG R L+ P SP P R+GE
Sbjct: 364 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 416
Query: 307 KIPPHALAGGRR 318
GGRR
Sbjct: 417 DTEARGPVGGRR 428
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 30.0 bits (66), Expect = 3.0
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 260 PAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR----AGESFTKIPPHALAG 315
P P A + AA PG L PSSPPPR +G +PP ALA
Sbjct: 95 PLPPALQPRGAPAVPAAPSPGP--------LPARPSSPPPRPSLPSGPHRPVLPPSALAA 146
Query: 316 GRRALPREL 324
R L R L
Sbjct: 147 PRPPLARPL 155
>gi|239741451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 30.0 bits (66), Expect = 3.0
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 255 SGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSP--------PPRAGESFT 306
SGR+ P P L+ +GGPG R L+ P SP P R+GE
Sbjct: 110 SGRSRPPPQSLLQTRPERASGSGGPG-------RGLQVPPGSPPGAAPLARPGRSGEGRR 162
Query: 307 KIPPHALAGGRR 318
GGRR
Sbjct: 163 DTEARGPVGGRR 174
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 29.6 bits (65), Expect = 3.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 236 GRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPS 295
G G + G + V G+ HP P + ++SG A+G P K LPS
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSG--ASGAPPTKPPTTPVGGGNLPS 287
Query: 296 SPPP 299
+PPP
Sbjct: 288 APPP 291
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 29.6 bits (65), Expect = 3.9
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 236 GRENGGRDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPS 295
G G + G + V G+ HP P + ++SG A+G P K LPS
Sbjct: 230 GPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSG--ASGAPPTKPPTTPVGGGNLPS 287
Query: 296 SPPP 299
+PPP
Sbjct: 288 APPP 291
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 29.6 bits (65), Expect = 3.9
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 22 AGAGGCICDPDVCFNQKQGKQGPESAVPGSGHTASTRHGQDKFADLVRAAVGTASASATV 81
AGAG P +++G Q +V G G A QD+ L+R VGT A
Sbjct: 242 AGAGVGAAGP----LERRGAQPGRHSVTGYGDCAVGARYQDELTALLRLTVGTGGREAGA 297
Query: 82 FQPPAGLTST----TPFPFL 97
P+G+ + P PF+
Sbjct: 298 RGEPSGIEPSGLEEPPGPFV 317
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 29.6 bits (65), Expect = 3.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Query: 242 RDGACSIEVLPRTSGRTHPAPAPCLREAASGLRAAGGPGFKGVIKVRFLRKLPSSPPPR 300
RD A + P G+ P+P G RAAGG G + + R R S+ PR
Sbjct: 346 RDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPR 404
>gi|168229161 coronin 7 [Homo sapiens]
Length = 925
Score = 29.6 bits (65), Expect = 3.9
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 67 LVRAAVGTASASATVFQPPAGLTS-TTPFPFLSTISTPSELGLTPS 111
++ VG A AS PP+ LTS +TP ++S+ S +G +PS
Sbjct: 414 VMETPVGDADASEGFSSPPSSLTSPSTPSSLGPSLSSTSGIGTSPS 459
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,833,315
Number of Sequences: 37866
Number of extensions: 857014
Number of successful extensions: 3012
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2975
Number of HSP's gapped (non-prelim): 86
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.