Guide to the Human Genome
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Name: LOC100131473 Sequence: fasta or formatted (331aa) NCBI GI: 239747766
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {331aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         32           3
 C cysteine            2.7          9           1
 D aspartate           2.1          7           1
 E glutamate           4.2         14           1
 F phenylalanine       4.5         15           2
 G glycine            10.9         36           2
 H histidine           3.3         11           2
 I isoleucine          3.6         12           2
 K lysine              4.5         15           1
 L leucine             9.4         31           2
 M methionine          0.3          1           1
 N asparagine          1.8          6           1
 P proline             9.1         30           3
 Q glutamine           2.7          9           1
 R arginine            8.8         29           2
 S serine              8.8         29           2
 T threonine           7.6         25           2
 V valine              4.5         15           1
 W tryptophan          1.2          4           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131473          1.000   PREDICTED: hypothetical protein 
LOC100287699          0.794   PREDICTED: hypothetical protein XP_002342252 
MUC5B                 0.017   mucin 5, subtype B, tracheobronchial 
LOC100292541          0.012   PREDICTED: hypothetical protein 
LOC100127891          0.012   PREDICTED: hypothetical protein 
AMPD2                 0.012   adenosine monophosphate deaminase 2 (isoform L) isof...
AMPD2                 0.012   adenosine monophosphate deaminase 2 (isoform L) isof...
BASP1                 0.011   brain abundant, membrane attached signal protein 1 [...
LOC100131098          0.011   PREDICTED: hypothetical protein 
SAMD11                0.011   sterile alpha motif domain containing 11 
RAB11FIP3             0.009   rab11-family interacting protein 3 isoform 1 
LOC100293375          0.009   PREDICTED: hypothetical protein 
DYNC2LI1              0.009   dynein 2 light intermediate chain isoform 1 
DYNC2LI1              0.009   dynein 2 light intermediate chain isoform 2 
DYNC2LI1              0.009   dynein 2 light intermediate chain isoform 3 
AGAP2                 0.008   centaurin, gamma 1 isoform PIKE-L 
DACH1                 0.008   dachshund homolog 1 isoform b 
DACH1                 0.008   dachshund homolog 1 isoform a 
DACH1                 0.008   dachshund homolog 1 isoform c 
LOC100131192          0.008   PREDICTED: hypothetical protein 
LOC100131102          0.008   PREDICTED: hypothetical protein 
LOC100131192          0.008   PREDICTED: hypothetical protein 
LOC100131102          0.008   PREDICTED: hypothetical protein 
LOC100131192          0.008   PREDICTED: hypothetical protein 
ATN1                  0.008   atrophin-1 
ATN1                  0.008   atrophin-1 
JUB                   0.008   ajuba isoform 1 
FLJ37078              0.008   hypothetical protein LOC222183 
CORO7                 0.008   coronin 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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