Guide to the Human Genome
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Name: LOC100292409 Sequence: fasta or formatted (171aa) NCBI GI: 239753000
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         20           2
 C cysteine            2.3          4           1
 D aspartate           1.8          3           1
 E glutamate           2.9          5           1
 F phenylalanine       2.3          4           1
 G glycine             9.9         17           4
 H histidine           3.5          6           1
 I isoleucine          1.2          2           1
 K lysine              2.3          4           1
 L leucine            10.5         18           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            15.2         26           2
 Q glutamine           3.5          6           1
 R arginine           16.4         28           4
 S serine              9.4         16           2
 T threonine           3.5          6           2
 V valine              0.6          1           1
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC646509             0.045   PREDICTED: hypothetical protein 
LOC100292296          0.042   PREDICTED: hypothetical protein 
LOC643355             0.042   PREDICTED: hypothetical protein 
LOC100290476          0.042   PREDICTED: hypothetical protein XP_002347412 
WASL                  0.039   Wiskott-Aldrich syndrome gene-like protein 
LOC100130360          0.036   PREDICTED: hypothetical protein 
LOC100290964          0.036   PREDICTED: hypothetical protein XP_002347802 
CTBP2                 0.036   C-terminal binding protein 2 isoform 2 
INSM1                 0.036   insulinoma-associated 1 
SRRM2                 0.033   splicing coactivator subunit SRm300 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.030   PREDICTED: hypothetical protein LOC80164 
SGIP1                 0.030   SH3-domain GRB2-like (endophilin) interacting prote...
LOC283999             0.030   hypothetical protein LOC283999 
LOC100292188          0.027   PREDICTED: hypothetical protein 
LOC100293319          0.027   PREDICTED: hypothetical protein 
LOC100288824          0.027   PREDICTED: hypothetical protein 
LOC100288824          0.027   PREDICTED: hypothetical protein XP_002343711 
SNX26                 0.027   sorting nexin 26 
HDAC7                 0.027   histone deacetylase 7 isoform d 
LOC100291609          0.027   PREDICTED: hypothetical protein XP_002346061 
LOC100293578          0.027   PREDICTED: hypothetical protein 
LOC100290886          0.027   PREDICTED: hypothetical protein XP_002346949 
LOC728597             0.027   PREDICTED: doublecortin domain-containing protein E...
LOC100286960          0.027   PREDICTED: hypothetical protein XP_002342813 
LOC728597             0.027   PREDICTED: doublecortin domain-containing protein E...
LOC100286960          0.027   PREDICTED: hypothetical protein 
B4GALNT4              0.027   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
BCL9L                 0.027   B-cell CLL/lymphoma 9-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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