Guide to the Human Genome
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Name: LOC100286960 Sequence: fasta or formatted (229aa) NCBI GI: 239508944
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {229aa} PREDICTED: hypothetical protein XP_002342813
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         18           2
 C cysteine            3.9          9           1
 D aspartate           1.7          4           1
 E glutamate           4.4         10           1
 F phenylalanine       3.9          9           1
 G glycine            12.2         28           3
 H histidine           0.4          1           1
 I isoleucine          0.4          1           1
 K lysine              1.3          3           1
 L leucine             4.8         11           2
 M methionine          0.4          1           1
 N asparagine          0.9          2           1
 P proline            15.3         35           3
 Q glutamine           1.3          3           1
 R arginine           17.9         41           4
 S serine             11.4         26           2
 T threonine           4.4         10           2
 V valine              3.1          7           1
 W tryptophan          4.4         10           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293578          1.000   PREDICTED: hypothetical protein 
LOC100290886          1.000   PREDICTED: hypothetical protein XP_002346949 
LOC100286960          1.000   PREDICTED: hypothetical protein XP_002342813 
CACNA1A               0.042   calcium channel, alpha 1A subunit isoform 4 
LOC100133655          0.042   PREDICTED: hypothetical protein 
ZDHHC1                0.042   zinc finger, DHHC-type containing 1 
LOC100293249          0.040   PREDICTED: similar to hCG2040393 
LOC100291245          0.040   PREDICTED: hypothetical protein XP_002347031 
LOC100287846          0.040   PREDICTED: hypothetical protein XP_002342883 
LOC100290372          0.038   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.038   PREDICTED: hypothetical protein XP_002342652 
DACT3                 0.038   thymus expressed gene 3-like 
ABCB10                0.031   ATP-binding cassette, sub-family B, member 10 [Homo...
BBC3                  0.031   BCL2 binding component 3 isoform 1 
COL1A2                0.029   alpha 2 type I collagen 
LOC100289316          0.029   PREDICTED: hypothetical protein 
LOC100289316          0.029   PREDICTED: hypothetical protein XP_002343619 
LOC100290812          0.029   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.029   PREDICTED: hypothetical protein XP_002343496 
FLJ37078              0.029   hypothetical protein LOC222183 
LOC100290139          0.027   PREDICTED: hypothetical protein XP_002346782 
DDN                   0.027   dendrin 
COL3A1                0.027   collagen type III alpha 1 preproprotein 
FLJ36031              0.027   hypothetical protein LOC168455 
SRRM2                 0.027   splicing coactivator subunit SRm300 
LOC645602             0.025   PREDICTED: hypothetical protein 
LOC645602             0.025   PREDICTED: hypothetical protein 
LOC645602             0.025   PREDICTED: hypothetical protein 
PHF15                 0.025   PHD finger protein 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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