Guide to the Human Genome
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Name: LOC100292188 Sequence: fasta or formatted (144aa) NCBI GI: 239757230
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         24           4
 C cysteine            3.5          5           2
 D aspartate           0.0          0           0
 E glutamate           2.1          3           1
 F phenylalanine       1.4          2           1
 G glycine            12.5         18           3
 H histidine           2.1          3           1
 I isoleucine          0.7          1           1
 K lysine              1.4          2           1
 L leucine             5.6          8           2
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline            13.2         19           4
 Q glutamine           4.9          7           1
 R arginine           14.6         21           2
 S serine              9.7         14           2
 T threonine           4.9          7           1
 V valine              4.2          6           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288824          1.000   PREDICTED: hypothetical protein 
LOC100288824          1.000   PREDICTED: hypothetical protein XP_002343711 
LOC100132234          0.070   PREDICTED: hypothetical protein LOC100132234 
LOC100289242          0.066   PREDICTED: hypothetical protein XP_002342243 
BBC3                  0.066   BCL2 binding component 3 isoform 1 
ONECUT3               0.066   one cut homeobox 3 
CDKN1C                0.062   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.062   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.062   cyclin-dependent kinase inhibitor 1C isoform a 
LOC100293818          0.062   PREDICTED: hypothetical protein 
LOC728650             0.062   PREDICTED: hypothetical protein 
DACT3                 0.062   thymus expressed gene 3-like 
LOC100127891          0.059   PREDICTED: hypothetical protein 
LOC100291061          0.055   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.055   PREDICTED: hypothetical protein XP_002343855 
ZNF469                0.055   zinc finger protein 469 
FOXC1                 0.055   forkhead box C1 
SYN1                  0.055   synapsin I isoform Ia 
SYN1                  0.055   synapsin I isoform Ib 
EMID2                 0.055   EMI domain containing 2 
COL1A1                0.051   alpha 1 type I collagen preproprotein 
LOC100293168          0.051   PREDICTED: hypothetical protein 
LOC100287177          0.051   PREDICTED: hypothetical protein 
LOC100287177          0.051   PREDICTED: hypothetical protein XP_002343692 
CREBBP                0.051   CREB binding protein isoform b 
CREBBP                0.051   CREB binding protein isoform a 
SAMD1                 0.051   sterile alpha motif domain containing 1 
LOC100131102          0.051   PREDICTED: hypothetical protein 
LOC100131102          0.051   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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