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Search of human proteins with 239752961
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752961 PREDICTED: hypothetical protein [Homo sapiens]
(366 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752961 PREDICTED: hypothetical protein [Homo sapiens] 768 0.0
gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo ... 435 e-122
gi|239741380 PREDICTED: hypothetical protein XP_002342189 [Homo ... 435 e-122
gi|22749357 chromosome 2 open reading frame 51 [Homo sapiens] 35 0.11
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ... 35 0.14
gi|103472003 forkhead box O4 [Homo sapiens] 33 0.53
gi|157311635 FAM83H [Homo sapiens] 32 0.90
gi|55750053 atrophin-1 [Homo sapiens] 31 1.5
gi|55750041 atrophin-1 [Homo sapiens] 31 1.5
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 31 2.0
gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens] 31 2.0
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 31 2.0
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 31 2.0
gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo ... 30 2.6
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 30 2.6
gi|29725607 smooth muscle cell associated protein-1 isoform 2 [H... 30 2.6
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 30 3.4
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 30 3.4
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 30 3.4
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 30 3.4
gi|13899257 transmembrane and ubiquitin-like domain containing 1... 30 3.4
gi|209862889 transmembrane and ubiquitin-like domain containing ... 30 3.4
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 30 3.4
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 4.5
gi|4502341 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4 [... 30 4.5
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 30 4.5
gi|38348348 TBC1 domain family, member 10C [Homo sapiens] 30 4.5
gi|222352129 von Willebrand factor A domain containing 5B2 [Homo... 29 5.8
gi|4507043 solute carrier family 6 member 4 [Homo sapiens] 29 5.8
>gi|239752961 PREDICTED: hypothetical protein [Homo sapiens]
Length = 366
Score = 768 bits (1984), Expect = 0.0
Identities = 366/366 (100%), Positives = 366/366 (100%)
Query: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVRGRQHNRPLVGD 60
MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVRGRQHNRPLVGD
Sbjct: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVRGRQHNRPLVGD 60
Query: 61 LKVGCRNQLRLDEPAPALNAKTTPKFLGPPHKTKSECARPHLLGPGSPCLHTLSKRSLIF 120
LKVGCRNQLRLDEPAPALNAKTTPKFLGPPHKTKSECARPHLLGPGSPCLHTLSKRSLIF
Sbjct: 61 LKVGCRNQLRLDEPAPALNAKTTPKFLGPPHKTKSECARPHLLGPGSPCLHTLSKRSLIF 120
Query: 121 PSVQNAHIFRNLTRWEKPWEPWVAAFKPWVNSQGLRPGPEGFAFWLWEVEDPAEEMFLAG 180
PSVQNAHIFRNLTRWEKPWEPWVAAFKPWVNSQGLRPGPEGFAFWLWEVEDPAEEMFLAG
Sbjct: 121 PSVQNAHIFRNLTRWEKPWEPWVAAFKPWVNSQGLRPGPEGFAFWLWEVEDPAEEMFLAG 180
Query: 181 LTWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFL 240
LTWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFL
Sbjct: 181 LTWAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFL 240
Query: 241 RCWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEA 300
RCWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEA
Sbjct: 241 RCWLLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEA 300
Query: 301 TERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEIL 360
TERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEIL
Sbjct: 301 TERHDEERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEIL 360
Query: 361 ALPHPS 366
ALPHPS
Sbjct: 361 ALPHPS 366
>gi|239747502 PREDICTED: hypothetical protein XP_002347667 [Homo
sapiens]
Length = 305
Score = 435 bits (1119), Expect = e-122
Identities = 216/240 (90%), Positives = 221/240 (92%), Gaps = 3/240 (1%)
Query: 130 RNLTRWEKPWEP--WVAAFKPWVNSQGLRP-GPEGFAFWLWEVEDPAEEMFLAGLTWAHL 186
RN R ++P + W+ + Q R GPEGFAFWLWEVEDPAEEMFLAGLTWAHL
Sbjct: 66 RNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGLTWAHL 125
Query: 187 SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP 246
SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP
Sbjct: 126 SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP 185
Query: 247 TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE 306
TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE
Sbjct: 186 TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE 245
Query: 307 ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS 366
ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS
Sbjct: 246 ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS 305
Score = 157 bits (397), Expect = 1e-38
Identities = 74/78 (94%), Positives = 75/78 (96%)
Query: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVRGRQHNRPLVGD 60
MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLV GRQHNRPLVGD
Sbjct: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
Query: 61 LKVGCRNQLRLDEPAPAL 78
LKVGCRNQLRLDEP +L
Sbjct: 61 LKVGCRNQLRLDEPGQSL 78
>gi|239741380 PREDICTED: hypothetical protein XP_002342189 [Homo
sapiens]
Length = 305
Score = 435 bits (1119), Expect = e-122
Identities = 216/240 (90%), Positives = 221/240 (92%), Gaps = 3/240 (1%)
Query: 130 RNLTRWEKPWEP--WVAAFKPWVNSQGLRP-GPEGFAFWLWEVEDPAEEMFLAGLTWAHL 186
RN R ++P + W+ + Q R GPEGFAFWLWEVEDPAEEMFLAGLTWAHL
Sbjct: 66 RNQLRLDEPGQSLTWILKQEKAHQHQHKRKAGPEGFAFWLWEVEDPAEEMFLAGLTWAHL 125
Query: 187 SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP 246
SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP
Sbjct: 126 SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLP 185
Query: 247 TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE 306
TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE
Sbjct: 186 TQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATERHDE 245
Query: 307 ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS 366
ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS
Sbjct: 246 ERGAVPVLYHSVFPYPTPKTCNFQGFGNIQERASKDTLELSSVVFLMGQELEILALPHPS 305
Score = 157 bits (397), Expect = 1e-38
Identities = 74/78 (94%), Positives = 75/78 (96%)
Query: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVRGRQHNRPLVGD 60
MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLV GRQHNRPLVGD
Sbjct: 1 MPHRLPWPDVPFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLVTGRQHNRPLVGD 60
Query: 61 LKVGCRNQLRLDEPAPAL 78
LKVGCRNQLRLDEP +L
Sbjct: 61 LKVGCRNQLRLDEPGQSL 78
>gi|22749357 chromosome 2 open reading frame 51 [Homo sapiens]
Length = 180
Score = 35.0 bits (79), Expect = 0.11
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 73 EPAPALNAKTTPKFLGPPHKTKSECARPHLLGPGSPCLH 111
+P L + P + P H+ +E A+ +LL PG PCLH
Sbjct: 122 DPNQVLQSADFPCLVDPKHQPAAEMAKGYLLLPGCPCLH 160
>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 34.7 bits (78), Expect = 0.14
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 205 PAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLPTQSPGPPGSP 256
P +LL+ + L FLL F L P+ LP F+ +LLP+ SP SP
Sbjct: 133 PLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSSSSSP 184
>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
sapiens]
Length = 257
Score = 34.7 bits (78), Expect = 0.14
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 205 PAVLLISVTPTLPRLEGSFLLRKSFTLAPMALPRFLRCWLLPTQSPGPPGSP 256
P +LL+ + L FLL F L P+ LP F+ +LLP+ SP SP
Sbjct: 133 PLLLLLPLFLLALSLPLFFLLLPLFLLLPLFLPLFIPLFLLPSSSPSSSSSP 184
>gi|103472003 forkhead box O4 [Homo sapiens]
Length = 505
Score = 32.7 bits (73), Expect = 0.53
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 244 LLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLAWSFGVRAVFKFSNMPWSTMNKEATER 303
LLP++ P P G P+P G TG K G R AW N ++ + +A E
Sbjct: 68 LLPSRLPEPAGGPQP-GILGAVTGPRKGGSRRNAW----------GNQSYAELISQAIES 116
Query: 304 HDEERGAVPVLY 315
E+R + +Y
Sbjct: 117 APEKRLTLAQIY 128
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 32.0 bits (71), Expect = 0.90
Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 36/161 (22%)
Query: 124 QNAHIFRN-LTRWEKPWEPWVAAFKPWVNSQGLRPGPEGFAFWLWEVEDPAEEMFLAGLT 182
Q +H R+ L + + W+P + +P + LR G GFA DP + AG
Sbjct: 444 QTSHFHRDQLYQQQYQWDPQLTPARPQGLFEKLRGGRAGFA-------DPDDFTLGAGPR 496
Query: 183 WAHL------------SSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLLRKSFT 230
+ L SS+S+ S P + P L S P P L F + +
Sbjct: 497 FPELGPDGHQRLDYVPSSASREVRHGSDPAFAPGPRGLEPSGAPR-PNLTQRFPCQAA-- 553
Query: 231 LAPMALPRFLRCWLLPTQSPGPPGSPEPRGAEPGATGLDKW 271
P P P PE RG G GL +W
Sbjct: 554 -------------ARPGPDPAPEAEPERRGGPEGRAGLRRW 581
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.2 bits (69), Expect = 1.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 76 PALNAKTTPKFLGPPH---KTKSECARPHLLGPGS 107
P T P +LGP +T SE ARPH++ PG+
Sbjct: 865 PGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGN 899
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 31.2 bits (69), Expect = 1.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 76 PALNAKTTPKFLGPPH---KTKSECARPHLLGPGS 107
P T P +LGP +T SE ARPH++ PG+
Sbjct: 865 PGSAVATVPPYLGPDTPALRTLSEYARPHVMSPGN 899
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/20 (70%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 249 SPGPPGSPEPRGAEPGATGL 268
SPGPPGSP PRG PG G+
Sbjct: 1728 SPGPPGSPGPRG-PPGHLGV 1746
>gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens]
Length = 715
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 46 LLVRGRQHNRPLVGDLKVG--------CRNQLRLDEPAPALNAKTTPKFLGPPHKTKSEC 97
L+ RGR N + G + G C N R+ +PA P++LG P K K+
Sbjct: 210 LVARGRTTNEQVTGKFRGGVNPFTNGCCNNVSRVLCSSPA------PRYLGRPKKEKTIV 263
Query: 98 ARPHLLGP 105
RP L P
Sbjct: 264 IRPPFLRP 271
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 250 PGPPGSPEPRGAEPGATGLD 269
PGPPG P PRG PG TG D
Sbjct: 197 PGPPGPPGPRG-PPGDTGKD 215
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 30.8 bits (68), Expect = 2.0
Identities = 14/20 (70%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 250 PGPPGSPEPRGAEPGATGLD 269
PGPPG P PRG PG TG D
Sbjct: 197 PGPPGPPGPRG-PPGDTGKD 215
>gi|239753433 PREDICTED: hypothetical protein XP_002345652 [Homo
sapiens]
Length = 302
Score = 30.4 bits (67), Expect = 2.6
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 183 WAHLSSSSQASGAASVPLASCAPAVLLISVTPTLPRLEGSFLL--------RKSFTLAPM 234
W S + A+G +VP+ + APA L+ L L G LL R+ + AP
Sbjct: 38 WMASSGPTWATGPLAVPIPAPAPAALIGGSQKVLVILVGLLLLGIDIVILSRERLSKAPP 97
Query: 235 ---ALPRFLRCWLLPTQSPGPPGS 255
AL L LL Q PG P S
Sbjct: 98 TPGALSSPLPQLLLAEQEPGTPSS 121
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 30.4 bits (67), Expect = 2.6
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 5/24 (20%)
Query: 250 PGPPGSPEPRG-----AEPGATGL 268
PGPPG P P+G EPGA GL
Sbjct: 841 PGPPGPPGPKGDPGPVGEPGAMGL 864
>gi|29725607 smooth muscle cell associated protein-1 isoform 2 [Homo
sapiens]
Length = 944
Score = 30.4 bits (67), Expect = 2.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 253 PGSPEPRGAEPGATGLDKWGKE 274
PG+PEPR A PGA+ +++ KE
Sbjct: 6 PGTPEPRPATPGASSVEQLRKE 27
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 223 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 254
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 223 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 254
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 223 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 254
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 30.0 bits (66), Expect = 3.4
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 223 FLLRKSFTLAPMALPRFLRCWLLPTQSPGPPG 254
FLLR+SF LAP A +RC L + P PPG
Sbjct: 297 FLLRRSFALAPQA---GVRCRDLDSLQPLPPG 325
>gi|13899257 transmembrane and ubiquitin-like domain containing 1
isoform 1 [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 3.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 220 EGSFLLRKSFTLAPMALPR--FLRCWLLPTQSPGPPGSPEPRGAEPGATGLD 269
+G L + TL + LP L C + + GPP P P G+EPG +GL+
Sbjct: 145 QGQLLGDDTQTLGSLHLPPNCVLHCHV--STRVGPPNPPCPPGSEPGPSGLE 194
>gi|209862889 transmembrane and ubiquitin-like domain containing 1
isoform 2 [Homo sapiens]
Length = 246
Score = 30.0 bits (66), Expect = 3.4
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 220 EGSFLLRKSFTLAPMALPR--FLRCWLLPTQSPGPPGSPEPRGAEPGATGLD 269
+G L + TL + LP L C + + GPP P P G+EPG +GL+
Sbjct: 145 QGQLLGDDTQTLGSLHLPPNCVLHCHV--STRVGPPNPPCPPGSEPGPSGLE 194
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 3.4
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 250 PGPPGSPEPRG--AEPGATGLDKWGKERLAWSFGVRAVFKFSNM 291
PGPPG P PRG PG G GK L G FS M
Sbjct: 79 PGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRM 122
Score = 28.9 bits (63), Expect = 7.6
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 251 GPPGSPEPRGAEPGATG 267
GPPG P PRG EPGA G
Sbjct: 255 GPPGVPGPRG-EPGAVG 270
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 8/30 (26%)
Query: 246 PTQSPGPPGSPEPRG--------AEPGATG 267
P PGPPG+P P+G EPGA+G
Sbjct: 186 PRGLPGPPGAPGPQGFQGPPGEPGEPGASG 215
>gi|4502341 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4
[Homo sapiens]
Length = 378
Score = 29.6 bits (65), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 7 WPDV--PFPAFSQGTGHLVQEKERSPLAAKSPRIRITPLQDLLV 48
WP PFP ++ GTG+++ + + R + PL+D+ V
Sbjct: 251 WPHTWGPFPPYASGTGYVLSASAVQLILKVASRAPLLPLEDVFV 294
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 29.6 bits (65), Expect = 4.5
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 244 LLPTQSPGPPGSPEPRGAEPGATGLDKWGKERLA-------------WSFGVRAVFKFSN 290
LLP P PP SP G PGA+G E A W FG+ ++ +
Sbjct: 34 LLPP--PLPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEARRLEQRWGFGLEELYGLAL 91
Query: 291 MPWSTMNKEATERHDEERGAVPVLYHSVFPYP-TPKTCNFQGFGNI 335
+ + +A EE+ + L+ V P P TC GF ++
Sbjct: 92 RFFKEKDGKAFHPTYEEKLKLVALHKQVLMGPYNPDTCPEVGFFDV 137
>gi|38348348 TBC1 domain family, member 10C [Homo sapiens]
Length = 446
Score = 29.6 bits (65), Expect = 4.5
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 157 PGPEGFAFWLWEVEDPAEEMFLAGLTWAHLSSSSQASGAASVPLASCAPAVLLISVTPTL 216
P P W + + A +F GLT L+ + A L A+ I P
Sbjct: 265 PFPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACPGLLETLGALRAI---PPA 321
Query: 217 PRLEGSFLLR-KSFTLAPMALPRFLRCWL--LPTQSPGPPGSPEPR 259
E +F+ + S L+ L R ++ L LP +PGPP P+ R
Sbjct: 322 QLQEEAFMSQVHSVVLSERDLQREIKAQLAQLPDSAPGPPPRPQVR 367
>gi|222352129 von Willebrand factor A domain containing 5B2 [Homo
sapiens]
Length = 1242
Score = 29.3 bits (64), Expect = 5.8
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 244 LLPTQSPGPPGSPEPRG----AEPGATGLDKWGKERLAW 278
L P PGPPG P P G + G+ +E LAW
Sbjct: 156 LTPLAPPGPPGPPRPPGLCDDSPTSCFGVGSLQEEGLAW 194
>gi|4507043 solute carrier family 6 member 4 [Homo sapiens]
Length = 630
Score = 29.3 bits (64), Expect = 5.8
Identities = 26/107 (24%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 141 PWVAAFKPWVNSQGLRPGPEGFAFWLWEVEDPAEEMFLAGLTWAHLSSSSQASGAASVPL 200
PW + W E W PAEE + + H S Q G S L
Sbjct: 196 PWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRHVLQIHRSKGLQDLGGISWQL 255
Query: 201 ASCAPAVL----------------LISVTPTLPRLEGSFLLRKSFTL 231
A C + ++ VT T P + S LL + TL
Sbjct: 256 ALCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVLLVRGATL 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,090,248
Number of Sequences: 37866
Number of extensions: 993266
Number of successful extensions: 5083
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 4895
Number of HSP's gapped (non-prelim): 252
length of query: 366
length of database: 18,247,518
effective HSP length: 104
effective length of query: 262
effective length of database: 14,309,454
effective search space: 3749076948
effective search space used: 3749076948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.