Guide to the Human Genome
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Name: LOC100291910 Sequence: fasta or formatted (302aa) NCBI GI: 239753433
Description:

PREDICTED: hypothetical protein XP_002345652

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         30           2
 C cysteine            1.0          3           1
 D aspartate           1.3          4           1
 E glutamate           4.3         13           2
 F phenylalanine       2.3          7           2
 G glycine             9.6         29           2
 H histidine           1.7          5           1
 I isoleucine          3.6         11           1
 K lysine              3.6         11           3
 L leucine            11.6         35           4
 M methionine          1.3          4           1
 N asparagine          0.3          1           1
 P proline             9.9         30           2
 Q glutamine           6.0         18           1
 R arginine            3.6         11           1
 S serine             10.9         33           2
 T threonine           9.6         29           2
 V valine              6.0         18           2
 W tryptophan          3.0          9           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345652 
MUC12                 0.026   PREDICTED: mucin 12 
MUC12                 0.026   PREDICTED: mucin 12, cell surface associated 
MDC1                  0.026   mediator of DNA-damage checkpoint 1 
SON                   0.024   SON DNA-binding protein isoform F 
SON                   0.024   SON DNA-binding protein isoform B 
SELV                  0.024   selenoprotein V 
PCLO                  0.021   piccolo isoform 2 
PCLO                  0.021   piccolo isoform 1 
MUC5B                 0.019   mucin 5, subtype B, tracheobronchial 
MUC16                 0.019   mucin 16 
SREBF1                0.015   sterol regulatory element binding transcription fact...
SREBF1                0.015   sterol regulatory element binding transcription fact...
LOC100134147          0.015   PREDICTED: hypothetical protein 
DMRTB1                0.015   DMRT-like family B with proline-rich C-terminal, 1 [...
LOC100128719          0.015   PREDICTED: hypothetical protein, partial 
LOC100128719          0.015   PREDICTED: hypothetical protein, partial 
BAT2                  0.015   HLA-B associated transcript-2 
MLXIP                 0.015   MLX interacting protein 
AAK1                  0.014   AP2 associated kinase 1 
MUC7                  0.014   mucin 7, secreted precursor 
LOC731282             0.014   PREDICTED: hypothetical protein 
SPEN                  0.014   spen homolog, transcriptional regulator 
MUC7                  0.014   mucin 7, secreted precursor 
MUC7                  0.014   mucin 7, secreted precursor 
LATS2                 0.014   LATS, large tumor suppressor, homolog 2 
SRCAP                 0.014   Snf2-related CBP activator protein 
LOC100289296          0.014   PREDICTED: hypothetical protein XP_002343918 
LOC100288902          0.014   PREDICTED: hypothetical protein XP_002343913 
DNHD1                 0.012   dynein heavy chain domain 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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