Guide to the Human Genome
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Name: C2orf51 Sequence: fasta or formatted (180aa) NCBI GI: 22749357
Description:

chromosome 2 open reading frame 51

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         12           2
 C cysteine            2.8          5           1
 D aspartate           7.2         13           1
 E glutamate           3.9          7           1
 F phenylalanine       4.4          8           2
 G glycine             5.0          9           1
 H histidine           5.6         10           1
 I isoleucine          2.2          4           1
 K lysine              6.7         12           1
 L leucine             8.9         16           3
 M methionine          2.8          5           1
 N asparagine          2.2          4           1
 P proline            12.2         22           1
 Q glutamine           6.7         12           1
 R arginine            4.4          8           1
 S serine              3.9          7           2
 T threonine           3.9          7           1
 V valine              4.4          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            5.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 2 open reading frame 51 
LOC100293938          0.027   PREDICTED: hypothetical protein 
ACCSL                 0.019   1-aminocyclopropane-1-carboxylate synthase homolog ...
CHD7                  0.014   chromodomain helicase DNA binding protein 7 
SEC24D                0.011   Sec24-related protein D 
PYGO1                 0.011   pygopus homolog 1 
PTPN21                0.008   protein tyrosine phosphatase, non-receptor type 21 ...
HERC5                 0.008   hect domain and RLD 5 
THBD                  0.008   thrombomodulin precursor 
HERC6                 0.008   hect domain and RLD 6 
BRAP                  0.008   BRCA1 associated protein 
PER1                  0.005   period 1 
DNMT1                 0.005   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
DNMT1                 0.005   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
ADAMTS4               0.005   ADAM metallopeptidase with thrombospondin type 1 mo...
G3BP2                 0.005   Ras-GTPase activating protein SH3 domain-binding pro...
G3BP2                 0.005   Ras-GTPase activating protein SH3 domain-binding pro...
C2orf71               0.005   hypothetical protein LOC388939 
FAM102A               0.005   early estrogen-induced gene 1 protein isoform a [Hom...
FAM102A               0.005   early estrogen-induced gene 1 protein isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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