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Search of human proteins with 239752714
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo
sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo ... 411 e-115
gi|239747249 PREDICTED: hypothetical protein [Homo sapiens] 408 e-114
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 35 0.057
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 33 0.22
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 33 0.22
gi|171906569 seipin isoform 1 [Homo sapiens] 33 0.22
gi|195230753 seipin isoform 1 [Homo sapiens] 33 0.22
gi|40068505 seipin isoform 2 [Homo sapiens] 33 0.22
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 32 0.28
gi|239749959 PREDICTED: hypothetical protein [Homo sapiens] 32 0.37
gi|42794622 zinc finger protein 784 [Homo sapiens] 32 0.48
gi|24497501 forkhead box A1 [Homo sapiens] 30 1.1
gi|113430055 PREDICTED: similar to cancer/testis antigen family ... 30 1.1
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 30 1.1
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 30 1.1
gi|47132620 keratin 2 [Homo sapiens] 30 1.1
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 30 1.4
gi|13899229 nuclear factor of kappa light polypeptide gene enhan... 30 1.4
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 30 1.8
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 30 1.8
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|153266792 adenylate cyclase activating polypeptide precursor ... 29 2.4
gi|153266795 adenylate cyclase activating polypeptide precursor ... 29 2.4
gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo sap... 29 2.4
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 29 2.4
gi|7657013 apoptosis antagonizing transcription factor [Homo sap... 29 2.4
gi|22749479 canopy 4 homolog [Homo sapiens] 29 2.4
>gi|239752714 PREDICTED: hypothetical protein XP_002345351 [Homo
sapiens]
Length = 202
Score = 411 bits (1057), Expect = e-115
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQGTWIGL 60
MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQGTWIGL
Sbjct: 1 MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQGTWIGL 60
Query: 61 IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120
IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE
Sbjct: 61 IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120
Query: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180
EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG
Sbjct: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180
Query: 181 LCRLAGRESVFGVSGSGCQWQA 202
LCRLAGRESVFGVSGSGCQWQA
Sbjct: 181 LCRLAGRESVFGVSGSGCQWQA 202
>gi|239747249 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 408 bits (1049), Expect = e-114
Identities = 201/202 (99%), Positives = 201/202 (99%)
Query: 1 MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQGTWIGL 60
MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAAL QGTWIGL
Sbjct: 1 MGPRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALRQGTWIGL 60
Query: 61 IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120
IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE
Sbjct: 61 IIRLDVDLALGQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAE 120
Query: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180
EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG
Sbjct: 121 EEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWG 180
Query: 181 LCRLAGRESVFGVSGSGCQWQA 202
LCRLAGRESVFGVSGSGCQWQA
Sbjct: 181 LCRLAGRESVFGVSGSGCQWQA 202
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 34.7 bits (78), Expect = 0.057
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 101 EWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGS 160
E +G E N+E PG A + EE G+P G + +P +RST A +
Sbjct: 97 EDAGAESNEEAPGEPSAGSSEEAPGEPSAGSSEE---------APGERSTSASA---EAA 144
Query: 161 PPPPAGSSASLPHFPATAWG 180
P PA A+ P P G
Sbjct: 145 PDGPALEEAAGPLVPGLVLG 164
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 33.1 bits (74), Expect = 0.16
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 3 PRLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLA 50
P LH + A G +GGL G GAA G G + SC +G G A
Sbjct: 156 PGLHPSAAAPGVGGRASGAGGLLGEGAAGG--GGAHLRHSCSTGRGSA 201
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.7 bits (73), Expect = 0.22
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 159 GSPPPPAGSSASLPHFPATAWGLCRLAGRESVFG 192
G+PPPP +A FP WG+ L+G + +FG
Sbjct: 131 GAPPPPLFDAA----FPTPQWGIVDLSGHQHLFG 160
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.7 bits (73), Expect = 0.22
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 159 GSPPPPAGSSASLPHFPATAWGLCRLAGRESVFG 192
G+PPPP +A FP WG+ L+G + +FG
Sbjct: 131 GAPPPPLFDAA----FPTPQWGIVDLSGHQHLFG 160
>gi|171906569 seipin isoform 1 [Homo sapiens]
Length = 462
Score = 32.7 bits (73), Expect = 0.22
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 88 RDSINRSTESVQDE--WSGREENDEKPGTQGATAEEEIQGDPRGGRG---DAVAALGCGV 142
+ + ES +D G+ +EKP Q + EEE++ + G G DA +
Sbjct: 368 QSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAALLTEANL 427
Query: 143 VSPLQRSTLAVVVVFRGSPPPPAGSSASLP 172
+P S A V+ GS P G+ P
Sbjct: 428 PAPAPASASAPVLETLGSSEPAGGALRQRP 457
>gi|195230753 seipin isoform 1 [Homo sapiens]
Length = 462
Score = 32.7 bits (73), Expect = 0.22
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 88 RDSINRSTESVQDE--WSGREENDEKPGTQGATAEEEIQGDPRGGRG---DAVAALGCGV 142
+ + ES +D G+ +EKP Q + EEE++ + G G DA +
Sbjct: 368 QSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAALLTEANL 427
Query: 143 VSPLQRSTLAVVVVFRGSPPPPAGSSASLP 172
+P S A V+ GS P G+ P
Sbjct: 428 PAPAPASASAPVLETLGSSEPAGGALRQRP 457
>gi|40068505 seipin isoform 2 [Homo sapiens]
Length = 398
Score = 32.7 bits (73), Expect = 0.22
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 88 RDSINRSTESVQDE--WSGREENDEKPGTQGATAEEEIQGDPRGGRG---DAVAALGCGV 142
+ + ES +D G+ +EKP Q + EEE++ + G G DA +
Sbjct: 304 QSDVTEDGESPEDPSGTEGQLSEEEKPDQQPLSGEEELEPEASDGSGSWEDAALLTEANL 363
Query: 143 VSPLQRSTLAVVVVFRGSPPPPAGSSASLP 172
+P S A V+ GS P G+ P
Sbjct: 364 PAPAPASASAPVLETLGSSEPAGGALRQRP 393
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 32.3 bits (72), Expect = 0.28
Identities = 24/81 (29%), Positives = 31/81 (38%)
Query: 92 NRSTESVQDEWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALGCGVVSPLQRSTL 151
N+ E+ + +SG D K + G R AV+ L SP +S L
Sbjct: 196 NQGDEAKEQTFSGGTSQDTKASESSKPWPDATYGTGSASRASAVSELSPRERSPALKSPL 255
Query: 152 AVVVVFRGSPPPPAGSSASLP 172
VVV R SP P S P
Sbjct: 256 QSVVVRRRSPRPSPVPKPSPP 276
>gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 959
Score = 32.0 bits (71), Expect = 0.37
Identities = 19/55 (34%), Positives = 27/55 (49%)
Query: 26 GRGAAAGPAGSRRVGESCFSGEGLAALGQGTWIGLIIRLDVDLALGQHLRELPLQ 80
G AGPAG + E + G LG+GT + +++D A LR LPL+
Sbjct: 567 GAAVGAGPAGRMLMAEPLVTRGGGNRLGEGTTLAQHLQVDKARAPSLALRSLPLR 621
>gi|42794622 zinc finger protein 784 [Homo sapiens]
Length = 323
Score = 31.6 bits (70), Expect = 0.48
Identities = 18/48 (37%), Positives = 20/48 (41%)
Query: 4 RLHGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAA 51
R H H PG +G SGG G AA G VG+ G G A
Sbjct: 268 RKHQRTHFHGPGPGLGDSGGQLGSSAAEGSGSGCGVGDPAEEGRGETA 315
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 109 DEKPGTQGATAEEEIQGDPRGG---RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPP-P 164
+++PG G +GG R D A SPL R G+P P P
Sbjct: 269 EKQPGAGGGGGSGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEGAPAPGP 328
Query: 165 AGSSASLPHFPATAWG 180
A S +L H ATA G
Sbjct: 329 AASPQTLDHSGATATG 344
>gi|113430055 PREDICTED: similar to cancer/testis antigen family
147, member B1 isoform 1 [Homo sapiens]
Length = 284
Score = 30.4 bits (67), Expect = 1.1
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 22 GGLNGRGAAAGPAGSRR-----------VGESCFSGEGLAALGQGTWIGLIIRLDVDLAL 70
G L R A P+GS VG + GEGL L + L+ +V L
Sbjct: 140 GRLMRRRRTAAPSGSEEPRLLLVHERLGVGAAGPEGEGLGLLQEAA---LVPEPEVPADL 196
Query: 71 GQHLRELPLQLLKLLVVRDSINRSTESVQDEWSGREENDEKPGTQGATAEEEI 123
+ RE + + + ++ + E ++E + EE+ E+P T+ A A EE+
Sbjct: 197 AEMAREPAEEPAEEELAEEA---AEEPAKEEPAAEEESAEEPATEEAAAPEEV 246
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 30.4 bits (67), Expect = 1.1
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 11/98 (11%)
Query: 101 EWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALGCG----VVSPLQRSTLAVVVV 156
E G E DE ++ +T G G A A G +P ST+A +
Sbjct: 2844 EEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAPAGLPSNPLAFNPFLLSTMAPGLF 2903
Query: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESVFGVS 194
+ PP +LP FPA LAG ++ G S
Sbjct: 2904 YPSMFLPPGLGGLTLPGFPA-------LAGLQNAVGSS 2934
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 127 PRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWGLCR--- 183
P GG G G G PLQR + V P P SS +L P ++G R
Sbjct: 1049 PGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAAQKPRP--SSGNLLQSPEPSYGPARPRQ 1106
Query: 184 --LAGRESVFGVSGSG 197
L+ S+ G GSG
Sbjct: 1107 QSLSKEGSIGGSGGSG 1122
Score = 29.3 bits (64), Expect = 2.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 122 EIQGDPRGGRGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLPHFPATAWGL 181
++QGD GGR ++ + V L S+ A + G P PAG + TA G+
Sbjct: 845 DLQGDGPGGRLNSSSVSNLAAVGDLLHSSQASLTAALGLRPAPAGRLSQGSGSSITAAGM 904
Query: 182 CRLAGRESVFGVSGSG 197
R S GV+ G
Sbjct: 905 -----RLSQMGVTTDG 915
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 30.4 bits (67), Expect = 1.1
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 8 NVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQG 55
+++V G G +GG GRG G GS G S FSG G G G
Sbjct: 73 SISVAGGGGGFGAAGGFGGRGGGFG-GGSSFGGGSGFSGGGFGGGGFG 119
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 6 HGNVAVHRPGAHVGVSGGLNGRGAAAGPAGSRRVGESCFSGEGLAALGQG 55
HG+ RPG G SGG G G G G + G SG G + G G
Sbjct: 556 HGSGGGQRPGGGHG-SGGGQGPGDGHGSGGGKNSGGGKGSGSGKGSDGDG 604
>gi|13899229 nuclear factor of kappa light polypeptide gene enhancer
in B-cells inhibitor, zeta isoform a [Homo sapiens]
Length = 718
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 121 EEIQGDPRGGRGDAVAALGCGVV-SPLQRSTLAVVVVFRGSPPPPAGSSA 169
+++ D RGG G AA GCG++ SPL S F G+ PP A A
Sbjct: 4 DKLLDDSRGGEGLRDAAGGCGLMTSPLNLS------YFYGASPPAAAPGA 47
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 1.8
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 131 RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLP------------HFPATA 178
R A+ A G ++ P R+ + F PPPPAG +S P PA
Sbjct: 296 RRGALPAPGA-LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALG 354
Query: 179 WGLCRLAGRESVFGVSGS 196
LAG + FGV S
Sbjct: 355 RPGDWLAGLQPAFGVKRS 372
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 1.8
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 131 RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLP------------HFPATA 178
R A+ A G ++ P R+ + F PPPPAG +S P PA
Sbjct: 296 RRGALPAPGA-LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALG 354
Query: 179 WGLCRLAGRESVFGVSGS 196
LAG + FGV S
Sbjct: 355 RPGDWLAGLQPAFGVKRS 372
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 10 AVHRPGAHVGVSGGLNGRGAAAG----------------PAGSRRVGESCFSGEGLAALG 53
AV G GV+GG G GAAAG AG RRVG + G G
Sbjct: 814 AVLVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAG 873
Query: 54 QG 55
G
Sbjct: 874 AG 875
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 1.8
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 131 RGDAVAALGCGVVSPLQRSTLAVVVVFRGSPPPPAGSSASLP------------HFPATA 178
R A+ A G ++ P R+ + F PPPPAG +S P PA
Sbjct: 296 RRGALPAPGA-LIGPAPRARRPLACTFANPPPPPAGCGSSAPIGEARRGERGDHWLPALG 354
Query: 179 WGLCRLAGRESVFGVSGS 196
LAG + FGV S
Sbjct: 355 RPGDWLAGLQPAFGVKRS 372
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 10 AVHRPGAHVGVSGGLNGRGAAAG----------------PAGSRRVGESCFSGEGLAALG 53
AV G GV+GG G GAAAG AG RRVG + G G
Sbjct: 814 AVLVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAG 873
Query: 54 QG 55
G
Sbjct: 874 AG 875
>gi|153266792 adenylate cyclase activating polypeptide precursor
[Homo sapiens]
Length = 176
Score = 29.3 bits (64), Expect = 2.4
Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESV 190
F GS PP AGS AS P A AW R AGR V
Sbjct: 53 FDGSEPPGAGSPASAPR-AAAAW--YRPAGRRDV 83
>gi|153266795 adenylate cyclase activating polypeptide precursor
[Homo sapiens]
Length = 176
Score = 29.3 bits (64), Expect = 2.4
Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 157 FRGSPPPPAGSSASLPHFPATAWGLCRLAGRESV 190
F GS PP AGS AS P A AW R AGR V
Sbjct: 53 FDGSEPPGAGSPASAPR-AAAAW--YRPAGRRDV 83
>gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo
sapiens]
Length = 761
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 160 SPPPPAGSSASLP---HFPATAWGLCRLAGRESVFG 192
SPPPPA +S+S P P T W L LA E G
Sbjct: 600 SPPPPASASSSTPVPLSPPDTTWPLPALATTEPAKG 635
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 96 ESVQDEWSGREENDEKPGTQGATAEEEIQG 125
E ++E +G+EE E+ G QG EEE +G
Sbjct: 774 ERKKEERAGKEEKGEEEGDQGEGEEEETEG 803
>gi|7657013 apoptosis antagonizing transcription factor [Homo
sapiens]
Length = 560
Score = 29.3 bits (64), Expect = 2.4
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 94 STESVQDEWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAV 135
S+E +DE SG EE D+ +QG +EE+ GD R D V
Sbjct: 169 SSEEEEDEESGMEEGDDAEDSQG-ESEEDRAGD-RNSEDDGV 208
>gi|22749479 canopy 4 homolog [Homo sapiens]
Length = 248
Score = 29.3 bits (64), Expect = 2.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 95 TESVQDEWSGREENDEKPGTQGATAEEEIQGDPRGGRGDAVAALG 139
T +Q+ W+G+E D + T+G +EE + + GD + G
Sbjct: 194 TACLQETWTGKEITDGEEKTEGEEEQEEEEEEEEEEGGDKMTKTG 238
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,713,703
Number of Sequences: 37866
Number of extensions: 511841
Number of successful extensions: 2737
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2683
Number of HSP's gapped (non-prelim): 104
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.