Guide to the Human Genome
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Name: LOC100294450 Sequence: fasta or formatted (959aa) NCBI GI: 239749959
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         86           2
 C cysteine            2.4         23           2
 D aspartate           2.3         22           1
 E glutamate           3.4         33           2
 F phenylalanine       1.9         18           1
 G glycine             9.9         95           3
 H histidine           2.6         25           2
 I isoleucine          0.7          7           1
 K lysine              3.3         32           2
 L leucine            12.2        117           3
 M methionine          1.4         13           1
 N asparagine          0.8          8           1
 P proline            12.4        119           4
 Q glutamine           6.5         62           2
 R arginine            7.1         68           4
 S serine              8.0         77           2
 T threonine           5.9         57           2
 V valine              6.6         63           2
 W tryptophan          2.5         24           1
 Y tyrosine            1.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SYN1                  0.011   synapsin I isoform Ib 
UNCX                  0.011   UNC homeobox 
TPRX1                 0.010   tetra-peptide repeat homeobox 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.010   PREDICTED: hypothetical protein LOC80164 
SYN1                  0.010   synapsin I isoform Ia 
NACA                  0.009   nascent polypeptide-associated complex alpha subuni...
LOC100292723          0.009   PREDICTED: hypothetical protein 
TAF4                  0.009   TBP-associated factor 4 
MYO15A                0.008   myosin XV 
MLL5                  0.008   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.008   myeloid/lymphoid or mixed-lineage leukemia 5 
SSBP2                 0.008   single-stranded DNA binding protein 2 
SRCAP                 0.008   Snf2-related CBP activator protein 
LOC100288963          0.007   PREDICTED: hypothetical protein XP_002342546 
HCN4                  0.007   hyperpolarization activated cyclic nucleotide-gated p...
LOC643355             0.007   PREDICTED: hypothetical protein 
KIAA1210              0.007   hypothetical protein LOC57481 
LOC728503             0.007   PREDICTED: hypothetical protein 
FLJ22184              0.007   PREDICTED: hypothetical protein FLJ22184 
LOC728503             0.007   PREDICTED: hypothetical protein 
LOC728503             0.007   PREDICTED: hypothetical protein 
LOC100132635          0.007   PREDICTED: similar to mucin 5, partial 
PRR18                 0.007   proline rich region 18 
SOX7                  0.007   SRY-box 7 
SMARCA4               0.007   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.007   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.007   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.007   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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