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Search of human proteins with 239752482
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752482 PREDICTED: similar to programmed cell death 6
interacting protein [Homo sapiens]
(128 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752482 PREDICTED: similar to programmed cell death 6 inter... 250 2e-67
gi|241982780 programmed cell death 6 interacting protein isoform... 237 2e-63
gi|22027538 programmed cell death 6 interacting protein isoform ... 237 2e-63
gi|9910266 kinesin family member 15 [Homo sapiens] 37 0.003
gi|209969819 hypothetical protein LOC253143 [Homo sapiens] 33 0.061
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 32 0.18
gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens] 32 0.18
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s... 32 0.18
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 31 0.23
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 30 0.67
gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens] 29 0.88
gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens] 29 0.88
gi|4501893 actinin, alpha 2 [Homo sapiens] 29 0.88
gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens] 29 1.1
gi|239741673 PREDICTED: protein immuno-reactive with anti-PTH po... 29 1.1
gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens] 29 1.1
gi|21264345 peripherin [Homo sapiens] 29 1.1
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 28 1.5
gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo sapi... 28 1.5
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 28 2.0
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens] 28 2.0
gi|139394648 DNA polymerase theta [Homo sapiens] 28 2.0
gi|93141204 methyltransferase like 2B [Homo sapiens] 28 2.0
gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens] 28 2.0
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 28 2.0
gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo ... 28 2.6
gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens] 28 2.6
gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens] 28 2.6
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 28 2.6
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 28 2.6
>gi|239752482 PREDICTED: similar to programmed cell death 6
interacting protein [Homo sapiens]
Length = 128
Score = 250 bits (639), Expect = 2e-67
Identities = 128/128 (100%), Positives = 128/128 (100%)
Query: 1 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 60
MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM
Sbjct: 1 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 60
Query: 61 KQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLAWK 120
KQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLAWK
Sbjct: 61 KQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLAWK 120
Query: 121 TERDELLK 128
TERDELLK
Sbjct: 121 TERDELLK 128
>gi|241982780 programmed cell death 6 interacting protein isoform 2
[Homo sapiens]
Length = 873
Score = 237 bits (604), Expect = 2e-63
Identities = 124/128 (96%), Positives = 124/128 (96%)
Query: 1 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 60
MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM
Sbjct: 585 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 644
Query: 61 KQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLAWK 120
KQSNNEANLREEVLKNLATA DNFVELVAN KEGTKFYNELTEILVRFQNKCSDIV A K
Sbjct: 645 KQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARK 704
Query: 121 TERDELLK 128
TERDELLK
Sbjct: 705 TERDELLK 712
>gi|22027538 programmed cell death 6 interacting protein isoform 1
[Homo sapiens]
Length = 868
Score = 237 bits (604), Expect = 2e-63
Identities = 124/128 (96%), Positives = 124/128 (96%)
Query: 1 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 60
MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM
Sbjct: 580 MTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM 639
Query: 61 KQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLAWK 120
KQSNNEANLREEVLKNLATA DNFVELVAN KEGTKFYNELTEILVRFQNKCSDIV A K
Sbjct: 640 KQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIVFARK 699
Query: 121 TERDELLK 128
TERDELLK
Sbjct: 700 TERDELLK 707
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 17 EEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVS-HQEFSKMKQSNNEANLREEVLK 75
E+ +TE + + GL QE L K+E L++ +Q +Q+ +++Q NE N + ++
Sbjct: 1070 EQLNMLTEASKKHSGLLQSAQEELTKKEALIQELQHKLNQKKEEVEQKKNEYNFK---MR 1126
Query: 76 NLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSD 114
L D+ E + K F L ++L + + D
Sbjct: 1127 QLEHVMDSAAEDPQSPKTPPHFQTHLAKLLETQEQEIED 1165
>gi|209969819 hypothetical protein LOC253143 [Homo sapiens]
Length = 2151
Score = 33.1 bits (74), Expect = 0.061
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 7 TALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNE 66
T+ +Q+ ++ + + ++ +D L +K E LLK+ +V + + K NNE
Sbjct: 154 TSPSQEDLLMQSSKELSHVDLPEDFLRSKEGNVQITAETLLKSAEVQGMKVNGTKTDNNE 213
Query: 67 ANLREEVLKNLATACDNFVEL 87
+ V K+L+ C F E+
Sbjct: 214 GHKNGNVSKDLSAGCGEFQEV 234
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.18
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 35 KVQESLKKQEGLLKNIQVSHQEFS---------------KMKQSNNEANLREEVLKNLAT 79
+++E L+ + LK++ S +E+S K+K++ A E + L
Sbjct: 192 QLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEK 251
Query: 80 ACDNFVELVANSK-EGTKFYNELTEILVRFQN 110
D+ E +A++K E + + L + L+ N
Sbjct: 252 TIDDLEETLASAKEENVEIHQTLDQTLLELNN 283
>gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.18
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 35 KVQESLKKQEGLLKNIQVSHQEFS---------------KMKQSNNEANLREEVLKNLAT 79
+++E L+ + LK++ S +E+S K+K++ A E + L
Sbjct: 139 QLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEK 198
Query: 80 ACDNFVELVANSK-EGTKFYNELTEILVRFQN 110
D+ E +A++K E + + L + L+ N
Sbjct: 199 TIDDLEETLASAKEENVEIHQTLDQTLLELNN 230
>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
sapiens]
Length = 669
Score = 31.6 bits (70), Expect = 0.18
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Query: 11 QDGVINEEALSVTELDRVYGGLTTKV--QESLKKQEGLLKNIQVSHQEFSKMKQSNNEAN 68
Q G INE + + GL + SL+++ G L+ + Q+ K +SNNE++
Sbjct: 433 QQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESS 492
Query: 69 LRE--------EVLKNLATACDNFVELVANSKEGTKFYNELTEI 104
++ KNL + +E + KE TK Y L E+
Sbjct: 493 FYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEM 536
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 31.2 bits (69), Expect = 0.23
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 36 VQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATACDNFVELVANSK--- 92
+ E+ K E L I ++ EFS+++ + NEA L EE +K + C E A K
Sbjct: 1304 ISENKKSIEKLKDVISMNASEFSEVQIALNEAKLSEEKVK---SECHRVQEENARLKKKK 1360
Query: 93 --------EGTKFYNELTEILVRFQNKCSDIVLAWKTERDEL 126
+ +K + EL+E + F+ D+ +A + D +
Sbjct: 1361 EQLQQEIEDWSKLHAELSEQIKSFEKSQKDLEVALTHKDDNI 1402
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 29.6 bits (65), Expect = 0.67
Identities = 18/100 (18%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 29 YGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR-EEVLKNLATACDNFVEL 87
Y L ++++L Q+ +L + ++ +++ +++ ++ + + L+ L + + + +L
Sbjct: 609 YDQLKVYLEQNLAAQDRVLCALTEANVQYAAVRRVLSDLDQKWNSTLQTLVASYEAYEDL 668
Query: 88 VANSKEGTKFYNELTEILVRFQNKCSDIVLAWKTERDELL 127
+ S+EG FY +L + + A + R +LL
Sbjct: 669 MKKSQEGRDFYADLESKVAALLERTQSTCQAREAARQQLL 708
>gi|63252902 tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 29.3 bits (64), Expect = 0.88
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 14 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFS--------------- 58
+I + E + G +++E LK LK+++ +++S
Sbjct: 171 IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSD 230
Query: 59 KMKQSNNEANLREEVLKNLATACDNFVELVANSK-EGTKFYNELTEILVRFQN 110
K+K++ A E + L + D+ E VA++K E + L + L+ N
Sbjct: 231 KLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELNN 283
>gi|63252896 tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 29.3 bits (64), Expect = 0.88
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 16/113 (14%)
Query: 14 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFS--------------- 58
+I + E + G +++E LK LK+++ +++S
Sbjct: 171 IIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSD 230
Query: 59 KMKQSNNEANLREEVLKNLATACDNFVELVANSK-EGTKFYNELTEILVRFQN 110
K+K++ A E + L + D+ E VA++K E + L + L+ N
Sbjct: 231 KLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELNN 283
>gi|4501893 actinin, alpha 2 [Homo sapiens]
Length = 894
Score = 29.3 bits (64), Expect = 0.88
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 15 INEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSK 59
+N+ + + G LT K +E+L++ E LL+ I H EF+K
Sbjct: 479 VNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 523
>gi|34419635 heat shock 70kDa protein 6 (HSP70B') [Homo sapiens]
Length = 643
Score = 28.9 bits (63), Expect = 1.1
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 49 NIQVSH--QEFSKMKQSNNEANLREEVLKNLATACDNFVELVANSK----------EGTK 96
N V+H +EF + + N R L+ L TAC+ +++S EG
Sbjct: 237 NRLVNHFMEEFRRKHGKDLSGNKR--ALRRLRTACERAKRTLSSSTQATLEIDSLFEGVD 294
Query: 97 FYNELTEILVRFQNKCSDI 115
FY +T RF+ CSD+
Sbjct: 295 FYTSITR--ARFEELCSDL 311
>gi|239741673 PREDICTED: protein immuno-reactive with anti-PTH
polyclonal antibodies [Homo sapiens]
Length = 1430
Score = 28.9 bits (63), Expect = 1.1
Identities = 20/112 (17%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 15 INEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVL 74
+ ++ + +++++Y +++ ++KQE + + + ++ + N+A+ +E+ +
Sbjct: 1204 LKQKQSQMKDIEKMYKSGYNTMEKCIEKQERFCQLKKQNMLLQQQLDDARNKADNQEKAI 1263
Query: 75 KNLATACDNFVE-LVANSKEGTKFYNELTEILVRFQNKCSDIVLAWKTERDE 125
N+ CD VE L A ++ E ++LV N + ++ E+ E
Sbjct: 1264 LNIQARCDARVENLQAECRKHRLLLEEDNKMLVNELNHSKEKKCQYEKEKAE 1315
>gi|52138513 SIN3 homolog B, transcription regulator [Homo sapiens]
Length = 1162
Score = 28.9 bits (63), Expect = 1.1
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 18 EALSVTELDRVYGGLTTKVQESLKKQ-----EGLLKNIQVSHQEFSKMKQSNNE---ANL 69
E + + R+YG ++ ESLKK +LK ++ +E+ + +Q N+
Sbjct: 537 EVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQY 596
Query: 70 REEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSD 114
+ LK+L NF + + NE+ + Q + S+
Sbjct: 597 EKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSE 641
>gi|21264345 peripherin [Homo sapiens]
Length = 470
Score = 28.9 bits (63), Expect = 1.1
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 15 INEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVL 74
+++ LS EL+R L +++ K E L+++QVS E +++Q EA ++ E+
Sbjct: 204 VDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVS-VESQQVQQVEVEATVKPELT 262
Query: 75 KNLATACDNFVELVA-NSKEGTKFYNELTEILVRFQNKCSDIVLAWKTERDE 125
L + + A N +E ++Y L N+ + + K E +E
Sbjct: 263 AALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNE 314
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 28.5 bits (62), Expect = 1.5
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 26 DRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVL----KNLATAC 81
D+V TK +ES + E LK + E K+K + EA + E + KNL
Sbjct: 1451 DKVLAEWKTKCEESQAELEASLKESRSLSTELFKLKNAYEEALDQLETVKRENKNLEQEI 1510
Query: 82 DNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLA 118
+ E +A E K +EL + + + + +DI LA
Sbjct: 1511 ADLTEQIA---ENGKTIHELEKSRKQIELEKADIQLA 1544
>gi|21361805 integrin alpha FG-GAP repeat containing 2 [Homo
sapiens]
Length = 447
Score = 28.5 bits (62), Expect = 1.5
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 15/77 (19%)
Query: 33 TTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATACDNFVELVANSK 92
T K+ E +++ + LL ++QV HQ F+ L+ L + E+VA +
Sbjct: 284 TLKLMEEMEEADKLLWSVQVDHQLFA---------------LEKLDVTGNGHEEVVACAW 328
Query: 93 EGTKFYNELTEILVRFQ 109
+G + + +VRFQ
Sbjct: 329 DGQTYIIDHNRTVVRFQ 345
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 28.1 bits (61), Expect = 2.0
Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 19/128 (14%)
Query: 13 GVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEF------------SKM 60
G + + L EL+R++G +++ + ++N+Q+ EF +K+
Sbjct: 739 GSLQKSRLKEEELERIWGNQIEMMKDRYITLDKAVENLQIRMDEFKTLQAQIKRLEMNKV 798
Query: 61 KQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVLAWK 120
+S E LRE+ ++ + V+L + EL E++ K + +WK
Sbjct: 799 NKSTMEEELREKADRSALAGKASRVDLETVAL-------ELNEMIQGILFKVTIHEDSWK 851
Query: 121 TERDELLK 128
+EL K
Sbjct: 852 KAMEELSK 859
>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
Length = 561
Score = 28.1 bits (61), Expect = 2.0
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 46 LLKNIQVSHQEFSKMKQSNNEA-------NLREEVLKNLATACDNFVELVANSKEGTKFY 98
L K IQV QE MK+ E + EE + NL T +N + ++ +E +
Sbjct: 465 LAKEIQVFQQELLSMKKVQQECEKLEEDKKMLEEEILNLKTHMENSMVELSKLQE---YK 521
Query: 99 NELTEILVRFQNKCSDIVLAWKTERDELLK 128
+EL E ++ K +I L + E + L+
Sbjct: 522 SELDERAMQAVEKLEEIHLQEQAEHKKQLE 551
>gi|139394648 DNA polymerase theta [Homo sapiens]
Length = 2590
Score = 28.1 bits (61), Expect = 2.0
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 32 LTTKVQESLKKQEGLLKNIQVSHQ--EFSKMKQSNNEANLREEVLKNLAT--------AC 81
L+ +Q L K L+N ++ FS + + N E N +EV+ NL T +
Sbjct: 1638 LSPGLQRILDKVSSPLENEKLKSMTINFSSLNRKNTELNEEQEVISNLETKQVQGISFSS 1697
Query: 82 DNFVELVANSKEGTKFYNELTEILVRFQNKCSD 114
+N V+ E ++E + +L R ++ D
Sbjct: 1698 NNEVKSKIEMLENNANHDETSSLLPRKESNIVD 1730
>gi|93141204 methyltransferase like 2B [Homo sapiens]
Length = 378
Score = 28.1 bits (61), Expect = 2.0
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 43 QEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATACDNFVELVANSKEGTKFYNELT 102
+ G K+ EF ++ S N+ +L++ L+N + C+ N+++G
Sbjct: 86 ENGFFKDRHWLFTEFPELAPSQNQNHLKDWFLENKSEVCE-----CRNNEDG-------P 133
Query: 103 EILVRFQNKCSDIVLAWKTE 122
+++ Q+KCS L KT+
Sbjct: 134 GLIMEEQHKCSSKSLEHKTQ 153
>gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens]
Length = 705
Score = 28.1 bits (61), Expect = 2.0
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
Query: 34 TKVQESLKKQEGLLKNIQVSHQEFSKMKQSN-----------NEANLRE----------E 72
TK + K LKN VS + + K+ + N N+ +L+E E
Sbjct: 174 TKAYFHMGKANLALKNYSVSRECYKKILEINPKLQTQVKGYLNQVDLQEKADLQEKEAHE 233
Query: 73 VL---KNLATACDNFVELVANSKEGTKFYNELTEILVRFQNKCSDIVL 117
+L KN A N +E ++ + FY EIL N+C++ L
Sbjct: 234 LLDSGKNTAVTTKNLLETLSKPDQIPLFYAGGIEILTEMINECTEQTL 281
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 28.1 bits (61), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 35 KVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREE 72
K +E +KK+E + K + +E +MKQ E +R +
Sbjct: 376 KEEEEMKKEEEMKKKEEKEEEEEEEMKQKEEEEEIRNK 413
>gi|239743762 PREDICTED: hypothetical protein XP_002342954 [Homo
sapiens]
Length = 183
Score = 27.7 bits (60), Expect = 2.6
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 22 VTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEAN--------LREEV 73
+ +L + + LT + + K L K+ QV QEF MK+ + L+EE+
Sbjct: 53 IKKLKQKFDDLTAEKEALSSKCVNLAKDNQVLQQEFLSMKKVQQQCEKLEEDKKMLKEEI 112
Query: 74 LKNLATACDN 83
L NL T +N
Sbjct: 113 L-NLKTHMEN 121
>gi|63252906 tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
Length = 284
Score = 27.7 bits (60), Expect = 2.6
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 14 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFS--------------- 58
+I + E + G +++E L+ + LK + + ++S
Sbjct: 171 IIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSD 230
Query: 59 KMKQSNNEANLREEVLKNLATACDNFVELVANSK-EGTKFYNELTEILVRFQN 110
K+K++ A E + L + D+ E VA++K E + L + L+ N
Sbjct: 231 KLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELNN 283
>gi|63252900 tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
Length = 284
Score = 27.7 bits (60), Expect = 2.6
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 16/113 (14%)
Query: 14 VINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFS--------------- 58
+I + E + G +++E L+ + LK + + ++S
Sbjct: 171 IIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEEEIKVLSD 230
Query: 59 KMKQSNNEANLREEVLKNLATACDNFVELVANSK-EGTKFYNELTEILVRFQN 110
K+K++ A E + L + D+ E VA++K E + L + L+ N
Sbjct: 231 KLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELNN 283
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 27.7 bits (60), Expect = 2.6
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 16 NEEALSVTELDRVY-GGLTT----KVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 70
N L + D++Y GGL T + + +LKK G LK+I++S ++ + + +
Sbjct: 2456 NNFGLDLKADDKIYFGGLPTLRNLRPEVNLKKYSGCLKDIEISRTPYNILSSPDYVGVTK 2515
Query: 71 EEVLKNLATAC---DNFVEL 87
L+N+ T FVEL
Sbjct: 2516 GCSLENVYTVSFPKPGFVEL 2535
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 27.7 bits (60), Expect = 2.6
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 35 KVQESLKK--QEGLLKNIQVSHQEF----SKMKQSNNEANLREEVLKNL----ATACDNF 84
K +E L K QE LL+ I+ E + +++S + E ++N+ +TA +NF
Sbjct: 580 KEKERLAKTEQETLLQIIETVKDEKLNLETTLQESTAARQIMEREIENIQTYQSTAEENF 639
Query: 85 VELVANSKEGTKFY-NELTEILVRFQNKCSDIVLAWKTERDELLK 128
++ + N+K Y N L+EI + S +V+ KT+ +++LK
Sbjct: 640 LQEIKNAKSEASIYKNSLSEIGKECE-MLSKMVMETKTD-NQILK 682
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,662,891
Number of Sequences: 37866
Number of extensions: 121004
Number of successful extensions: 608
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 88
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.