PRPF39 6056

Name: PRPF39	Sequence: fasta or formatted (669aa)		NCBI GI: 156938331
Description: PRP39 pre-mRNA processing factor 39 homolog		Referenced in: Small RNAs in RNA Processing Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 36 2 C cysteine 0.9 6 1 D aspartate 5.1 34 2 E glutamate 11.2 75 2 F phenylalanine 4.2 28 2 G glycine 4.2 28 1 H histidine 3.9 26 2 I isoleucine 5.1 34 2 K lysine 6.0 40 2 L leucine 8.5 57 2 M methionine 2.4 16 1 N asparagine 7.2 48 2 P proline 4.5 30 4 Q glutamine 4.2 28 2 R arginine 5.2 35 2 S serine 5.5 37 3 T threonine 4.9 33 2 V valine 5.1 34 3 W tryptophan 1.8 12 1 Y tyrosine 4.8 32 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PRP39 pre-mRNA processing factor 39 homolog CSTF3 0.031 cleavage stimulation factor subunit 3 isoform 1 [Homo... PRPF6 0.020 PRP6 pre-mRNA processing factor 6 homolog SART3 0.014 squamous cell carcinoma antigen recognized by T cells... CRNKL1 0.014 crooked neck-like 1 protein CSTF3 0.012 cleavage stimulation factor subunit 3 isoform 2 [Hom... LOC653889 0.012 PREDICTED: similar to U5 snRNP-associated 102 kDa p... PMFBP1 0.011 polyamine modulated factor 1 binding protein 1 isof... LRRIQ1 0.011 leucine-rich repeats and IQ motif containing 1 isof... LRRIQ1 0.011 leucine-rich repeats and IQ motif containing 1 isof... PMFBP1 0.010 polyamine modulated factor 1 binding protein 1 isof... MYH11 0.010 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.010 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... MYH11 0.010 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... MYH11 0.010 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... XAB2 0.010 XPA binding protein 2 KIF20B 0.010 M-phase phosphoprotein 1 LMO7 0.009 LIM domain only 7 isoform 1 LMO7 0.009 LIM domain only 7 isoform 2 CNTLN 0.007 centlein isoform 1 KRT79 0.007 keratin 6L LEKR1 0.007 leucine, glutamate and lysine rich 1 UTP6 0.007 hepatocellular carcinoma-associated antigen 66 [Homo... HIP1 0.007 huntingtin interacting protein 1 UACA 0.007 uveal autoantigen with coiled-coil domains and ankyr... UACA 0.007 uveal autoantigen with coiled-coil domains and ankyr... FYCO1 0.007 FYVE and coiled-coil domain containing 1 RAI14 0.007 retinoic acid induced 14 isoform d RAI14 0.007 retinoic acid induced 14 isoform c RAI14 0.007 retinoic acid induced 14 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.