Guide to the Human Genome
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Name: ITFG2 Sequence: fasta or formatted (447aa) NCBI GI: 21361805
Description:

integrin alpha FG-GAP repeat containing 2

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         24           2
 C cysteine            3.1         14           1
 D aspartate           6.5         29           2
 E glutamate           6.9         31           2
 F phenylalanine       2.5         11           1
 G glycine             8.3         37           1
 H histidine           3.6         16           2
 I isoleucine          2.9         13           2
 K lysine              4.5         20           2
 L leucine            11.9         53           2
 M methionine          1.8          8           1
 N asparagine          3.4         15           1
 P proline             4.9         22           2
 Q glutamine           4.5         20           1
 R arginine            3.8         17           1
 S serine              6.5         29           2
 T threonine           6.3         28           1
 V valine              9.2         41           2
 W tryptophan          1.8          8           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha FG-GAP repeat containing 2 
BBS2                  0.009   Bardet-Biedl syndrome 2 protein 
FAT4                  0.008   FAT tumor suppressor homolog 4 
LOC100292227          0.007   PREDICTED: hypothetical protein 
LOC100289692          0.007   PREDICTED: hypothetical protein XP_002347699 
LOC100287811          0.007   PREDICTED: hypothetical protein XP_002344136 
ACSL6                 0.007   acyl-CoA synthetase long-chain family member 6 isofo...
ACSL6                 0.007   acyl-CoA synthetase long-chain family member 6 isofo...
ITGA2                 0.006   integrin alpha 2 precursor 
FAM13A                0.006   family with sequence similarity 13, member A1 isofor...
ADAM33                0.006   ADAM metallopeptidase domain 33 isoform alpha prepro...
ADAM33                0.006   ADAM metallopeptidase domain 33 isoform beta preprop...
WDR25                 0.004   WD repeat domain 25 
WDR25                 0.004   WD repeat domain 25 
HCFC1                 0.004   host cell factor 1 
KPTN                  0.004   kaptin (actin binding protein) 
KATNB1                0.004   katanin p80 subunit B 1 
F13B                  0.004   coagulation factor XIII B subunit precursor 
IL13RA2               0.004   interleukin 13 receptor, alpha 2 precursor 
ZNF232                0.004   zinc finger protein 232 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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