Guide to the Human Genome
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Name: C22orf30 Sequence: fasta or formatted (2151aa) NCBI GI: 209969819
Description:

hypothetical protein LOC253143

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1        109           2
 C cysteine            3.3         70           2
 D aspartate           4.8        103           2
 E glutamate           9.0        194           3
 F phenylalanine       2.6         56           2
 G glycine             5.2        112           3
 H histidine           3.0         64           2
 I isoleucine          3.7         79           2
 K lysine              7.4        159           3
 L leucine             9.0        194           3
 M methionine          2.0         43           1
 N asparagine          4.5         96           2
 P proline             6.3        135           2
 Q glutamine           4.9        106           2
 R arginine            4.5         97           2
 S serine             12.1        261           4
 T threonine           5.9        127           2
 V valine              5.3        113           2
 W tryptophan          0.3          6           1
 Y tyrosine            1.3         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC253143 
PRR14                 0.028   proline rich 14 
TRIP11                0.005   thyroid hormone receptor interactor 11 
MUC16                 0.004   mucin 16 
ANKRD62               0.003   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.003   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
CLSPN                 0.003   claspin 
ANKRD62               0.003   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
SEMG2                 0.003   semenogelin II precursor 
DSPP                  0.003   dentin sialophosphoprotein preproprotein 
AKAP12                0.003   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.003   A kinase (PRKA) anchor protein 12 isoform 2 
ANKRD36               0.003   PREDICTED: ankyrin repeat domain 36 
SLC16A2               0.003   solute carrier family 16, member 2 
FNIP1                 0.003   folliculin interacting protein 1 isoform 2 
FNIP1                 0.003   folliculin interacting protein 1 isoform 1 
ZW10                  0.003   centromere/kinetochore protein zw10 
RBBP6                 0.003   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.003   retinoblastoma-binding protein 6 isoform 1 
MICAL3                0.003   microtubule associated monoxygenase, calponin and L...
TBC1D10B              0.003   TBC1 domain family, member 10B 
KIF18A                0.003   kinesin family member 18A 
MXRA5                 0.003   adlican 
TTN                   0.002   titin isoform N2-A 
SYTL2                 0.002   synaptotagmin-like 2 isoform a 
SYTL2                 0.002   synaptotagmin-like 2 isoform i 
SYTL2                 0.002   synaptotagmin-like 2 isoform g 
HOMER2                0.002   homer 2 isoform 4 
BDP1                  0.002   transcription factor-like nuclear regulator 
TP53BP2               0.002   tumor protein p53 binding protein, 2 isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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