Guide to the Human Genome
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Name: LOC727969 Sequence: fasta or formatted (208aa) NCBI GI: 239752465
Description:

PREDICTED: similar to TSPY-like 2

Referenced in:

Y-linked Genes

Other entries for this name:
alt mRNA [208aa] PREDICTED: similar to hCG1807781
alt prot [208aa] PREDICTED: similar to hCG1807781
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         27           2
 C cysteine            2.4          5           1
 D aspartate           2.9          6           2
 E glutamate           7.7         16           3
 F phenylalanine       3.8          8           1
 G glycine             7.2         15           2
 H histidine           1.0          2           1
 I isoleucine          2.4          5           2
 K lysine              3.4          7           1
 L leucine            11.5         24           2
 M methionine          2.9          6           1
 N asparagine          1.0          2           1
 P proline             7.7         16           1
 Q glutamine           6.2         13           1
 R arginine            9.6         20           2
 S serine              3.8          8           1
 T threonine           3.4          7           1
 V valine              7.7         16           2
 W tryptophan          1.9          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TSPY-like 2 
LOC727969             1.000   PREDICTED: similar to hCG1807781 
LOC727969             0.997   PREDICTED: similar to hCG1807781 
LOC100289087          0.354   PREDICTED: hypothetical protein XP_002344239 
LOC728403             0.354   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY2                 0.354   testis specific protein, Y-linked 2 
TSPY1                 0.346   testis specific protein, Y-linked 1 
TSPY3                 0.344   testis specific protein, Y-linked 3 
LOC728395             0.336   PREDICTED: similar to testis specific protein, Y-li...
LOC728132             0.328   PREDICTED: similar to testis specific protein, Y-li...
LOC100288465          0.115   PREDICTED: hypothetical protein XP_002343910 
LOC100289265          0.094   PREDICTED: hypothetical protein 
LOC100289265          0.094   PREDICTED: hypothetical protein XP_002344242 
TSPYL1                0.092   TSPY-like 1 
TSPYL4                0.084   TSPY-like 4 
LOC100291283          0.079   PREDICTED: hypothetical protein XP_002348282 
TSPYL5                0.076   TSPY-like 5 
TSPYL6                0.069   TSPY-like 6 
TSPYL2                0.066   TSPY-like 2 
LOC100130208          0.061   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.061   PREDICTED: hypothetical protein 
SET                   0.025   SET translocation (myeloid leukemia-associated) iso...
ZNF853                0.020   zinc finger protein 853 
SET                   0.020   SET translocation (myeloid leukemia-associated) iso...
CCDC6                 0.018   coiled-coil domain containing 6 
AMPH                  0.015   amphiphysin isoform 2 
AMPH                  0.015   amphiphysin isoform 1 
XIRP2                 0.013   xin actin-binding repeat containing 2 isoform 1 [Ho...
CCDC88B               0.013   coiled-coil domain containing 88 
KCNH2                 0.010   voltage-gated potassium channel, subfamily H, member...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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