Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC728132 Sequence: fasta or formatted (314aa) NCBI GI: 239747006
Description:

PREDICTED: similar to testis specific protein, Y-linked 3

Referenced in:

Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         31           2
 C cysteine            1.3          4           1
 D aspartate           3.2         10           2
 E glutamate          13.1         41           3
 F phenylalanine       3.5         11           2
 G glycine             5.1         16           1
 H histidine           2.2          7           2
 I isoleucine          3.2         10           1
 K lysine              3.8         12           1
 L leucine             8.0         25           3
 M methionine          3.2         10           1
 N asparagine          3.8         12           1
 P proline             5.4         17           2
 Q glutamine           5.1         16           2
 R arginine            7.6         24           3
 S serine              6.1         19           2
 T threonine           2.9          9           1
 V valine              8.3         26           2
 W tryptophan          1.3          4           1
 Y tyrosine            3.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to testis specific protein, Y-li... 
LOC728395             0.997   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.974   testis specific protein, Y-linked 3 
LOC100289087          0.970   PREDICTED: hypothetical protein XP_002344239 
TSPY1                 0.960   testis specific protein, Y-linked 1 
TSPY2                 0.959   testis specific protein, Y-linked 2 
LOC728403             0.959   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPYL1                0.293   TSPY-like 1 
TSPYL4                0.265   TSPY-like 4 
TSPYL2                0.243   TSPY-like 2 
TSPYL6                0.238   TSPY-like 6 
TSPYL5                0.230   TSPY-like 5 
LOC727969             0.214   PREDICTED: similar to hCG1807781 
LOC727969             0.214   PREDICTED: similar to TSPY-like 2 
LOC727969             0.214   PREDICTED: similar to hCG1807781 
SET                   0.205   SET translocation (myeloid leukemia-associated) iso...
SET                   0.197   SET translocation (myeloid leukemia-associated) iso...
LOC646817             0.190   PREDICTED: similar to SET translocation 
LOC646817             0.190   PREDICTED: similar to SET translocation 
LOC646817             0.190   PREDICTED: similar to SET translocation 
LOC389217             0.166   PREDICTED: similar to SET translocation 
LOC389217             0.166   PREDICTED: similar to SET translocation 
LOC389217             0.166   PREDICTED: similar to SET translocation 
LOC100289265          0.164   PREDICTED: hypothetical protein 
LOC100289265          0.164   PREDICTED: hypothetical protein XP_002344242 
LOC100288465          0.131   PREDICTED: hypothetical protein XP_002343910 
LOC100130208          0.094   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.094   PREDICTED: hypothetical protein 
LOC100291283          0.084   PREDICTED: hypothetical protein XP_002348282 
LOC100292671          0.066   PREDICTED: similar to CYorf16 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press