Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SET Sequence: fasta or formatted (290aa) NCBI GI: 170763500
Description:

SET translocation (myeloid leukemia-associated) isoform 1

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
HLA and Related Proteins
Testes and Sperm

Other entries for this name:
alt prot [277aa] SET translocation (myeloid leukemia-associated) isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         12           1
 C cysteine            0.0          0           0
 D aspartate          11.0         32           5
 E glutamate          18.6         54           4
 F phenylalanine       4.1         12           2
 G glycine             5.9         17           1
 H histidine           2.1          6           1
 I isoleucine          4.1         12           1
 K lysine              7.9         23           3
 L leucine             6.2         18           2
 M methionine          0.7          2           1
 N asparagine          3.4         10           1
 P proline             6.6         19           3
 Q glutamine           4.8         14           2
 R arginine            3.4         10           1
 S serine              6.2         18           2
 T threonine           3.4         10           2
 V valine              3.4         10           1
 W tryptophan          1.4          4           1
 Y tyrosine            2.4          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET translocation (myeloid leukemia-associated) iso... 
LOC646817             0.915   PREDICTED: similar to SET translocation 
LOC646817             0.915   PREDICTED: similar to SET translocation 
LOC646817             0.915   PREDICTED: similar to SET translocation 
SET                   0.871   SET translocation (myeloid leukemia-associated) iso...
LOC389217             0.812   PREDICTED: similar to SET translocation 
LOC389217             0.812   PREDICTED: similar to SET translocation 
LOC389217             0.812   PREDICTED: similar to SET translocation 
TSPYL5                0.256   TSPY-like 5 
TSPYL2                0.242   TSPY-like 2 
TSPYL1                0.239   TSPY-like 1 
TSPYL4                0.232   TSPY-like 4 
TSPYL6                0.221   TSPY-like 6 
LOC100289087          0.216   PREDICTED: hypothetical protein XP_002344239 
LOC728395             0.216   PREDICTED: similar to testis specific protein, Y-li...
TSPY2                 0.216   testis specific protein, Y-linked 2 
LOC728403             0.216   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC728132             0.216   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.216   testis specific protein, Y-linked 3 
TSPY1                 0.213   testis specific protein, Y-linked 1 
NAP1L1                0.127   nucleosome assembly protein 1-like 1 
NAP1L1                0.127   nucleosome assembly protein 1-like 1 
NAP1L4                0.106   nucleosome assembly protein 1-like 4 
RPGR                  0.064   retinitis pigmentosa GTPase regulator isoform C [Hom...
ANP32B                0.063   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
NAP1L2                0.061   nucleosome assembly protein 1-like 2 
NAP1L3                0.061   nucleosome assembly protein 1-like 3 
MYT1L                 0.057   myelin transcription factor 1-like 
MTERFD2               0.056   MTERF domain containing 2 
MYT1                  0.054   myelin transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press