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Name: SET Sequence: fasta or formatted (277aa) NCBI GI: 170763498
Description:

SET translocation (myeloid leukemia-associated) isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
HLA and Related Proteins
Testes and Sperm

Other entries for this name:
alt prot [290aa] SET translocation (myeloid leukemia-associated) isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         12           2
 C cysteine            0.0          0           0
 D aspartate          12.3         34           5
 E glutamate          19.5         54           4
 F phenylalanine       4.3         12           2
 G glycine             5.4         15           1
 H histidine           2.5          7           1
 I isoleucine          4.3         12           1
 K lysine              7.2         20           2
 L leucine             5.8         16           2
 M methionine          0.7          2           1
 N asparagine          4.3         12           1
 P proline             3.6         10           1
 Q glutamine           4.3         12           2
 R arginine            2.9          8           1
 S serine              6.9         19           2
 T threonine           3.6         10           2
 V valine              4.0         11           1
 W tryptophan          1.4          4           1
 Y tyrosine            2.5          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET translocation (myeloid leukemia-associated) iso... 
SET                   0.919   SET translocation (myeloid leukemia-associated) iso...
LOC646817             0.842   PREDICTED: similar to SET translocation 
LOC646817             0.842   PREDICTED: similar to SET translocation 
LOC646817             0.842   PREDICTED: similar to SET translocation 
LOC389217             0.767   PREDICTED: similar to SET translocation 
LOC389217             0.767   PREDICTED: similar to SET translocation 
LOC389217             0.767   PREDICTED: similar to SET translocation 
TSPYL2                0.256   TSPY-like 2 
TSPYL5                0.256   TSPY-like 5 
TSPYL1                0.252   TSPY-like 1 
TSPYL4                0.248   TSPY-like 4 
TSPYL6                0.233   TSPY-like 6 
LOC100289087          0.221   PREDICTED: hypothetical protein XP_002344239 
LOC728395             0.221   PREDICTED: similar to testis specific protein, Y-li...
TSPY2                 0.221   testis specific protein, Y-linked 2 
LOC728403             0.219   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC728132             0.219   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.219   testis specific protein, Y-linked 3 
TSPY1                 0.215   testis specific protein, Y-linked 1 
NAP1L1                0.136   nucleosome assembly protein 1-like 1 
NAP1L1                0.136   nucleosome assembly protein 1-like 1 
NAP1L4                0.116   nucleosome assembly protein 1-like 4 
RPGR                  0.068   retinitis pigmentosa GTPase regulator isoform C [Hom...
ANP32B                0.066   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
NAP1L2                0.066   nucleosome assembly protein 1-like 2 
NAP1L3                0.062   nucleosome assembly protein 1-like 3 
MYT1L                 0.061   myelin transcription factor 1-like 
MTERFD2               0.059   MTERF domain containing 2 
MYT1                  0.057   myelin transcription factor 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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