Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289265 Sequence: fasta or formatted (357aa) NCBI GI: 239747010
Description:

PREDICTED: hypothetical protein XP_002344242

Referenced in:

Y-linked Genes

Other entries for this name:
alt mRNA [357aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         30           3
 C cysteine            3.4         12           1
 D aspartate           3.6         13           1
 E glutamate           8.7         31           3
 F phenylalanine       2.8         10           1
 G glycine             9.8         35           2
 H histidine           4.5         16           1
 I isoleucine          2.8         10           2
 K lysine              2.2          8           1
 L leucine             9.2         33           2
 M methionine          3.1         11           1
 N asparagine          1.7          6           1
 P proline             6.4         23           2
 Q glutamine           3.9         14           1
 R arginine            5.9         21           2
 S serine              9.5         34           2
 T threonine           2.2          8           1
 V valine              7.0         25           3
 W tryptophan          2.8         10           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344242 
LOC100289265          1.000   PREDICTED: hypothetical protein 
LOC100292670          0.441   PREDICTED: similar to CYorf16 protein 
LOC100288465          0.352   PREDICTED: hypothetical protein XP_002343910 
LOC100289188          0.345   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.345   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.345   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.345   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.345   PREDICTED: hypothetical protein XP_002344481 
LOC100132506          0.331   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.276   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.276   PREDICTED: hypothetical protein 
LOC100132932          0.271   PREDICTED: similar to CYorf16 protein 
LOC100292671          0.231   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.231   PREDICTED: hypothetical protein XP_002348288 
LOC728403             0.148   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC100289087          0.146   PREDICTED: hypothetical protein XP_002344239 
TSPY2                 0.145   testis specific protein, Y-linked 2 
TSPY1                 0.144   testis specific protein, Y-linked 1 
TSPY3                 0.142   testis specific protein, Y-linked 3 
LOC728395             0.141   PREDICTED: similar to testis specific protein, Y-li...
LOC728132             0.137   PREDICTED: similar to testis specific protein, Y-li...
LOC100291283          0.120   PREDICTED: hypothetical protein XP_002348282 
LOC727969             0.051   PREDICTED: similar to hCG1807781 
LOC727969             0.051   PREDICTED: similar to TSPY-like 2 
LOC727969             0.051   PREDICTED: similar to hCG1807781 
TSPYL1                0.035   TSPY-like 1 
TSPYL6                0.026   TSPY-like 6 
PPIL3                 0.021   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
TSPYL5                0.019   TSPY-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press